Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40195
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 155 5e-38
07_01_0756 + 5819367-5820038,5820847-5821005 152 4e-37
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 70 2e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 48 1e-05
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 29 4.6
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.6
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.6
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 29 4.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (375), Expect = 5e-38
Identities = 70/81 (86%), Positives = 76/81 (93%)
Frame = +2
Query: 266 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 445
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 446 AKLSVLPVRRGYWGNKIGKPH 508
AKLSV+PVRRGYWGNKIG+PH
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPH 161
Score = 97.9 bits (233), Expect = 9e-21
Identities = 42/57 (73%), Positives = 51/57 (89%)
Frame = +1
Query: 511 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGKF 681
VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST T G F
Sbjct: 163 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 219
Score = 62.1 bits (144), Expect = 5e-10
Identities = 24/41 (58%), Positives = 36/41 (87%)
Frame = +3
Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I+
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIV 78
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 152 bits (368), Expect = 4e-37
Identities = 69/81 (85%), Positives = 75/81 (92%)
Frame = +2
Query: 266 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 445
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 446 AKLSVLPVRRGYWGNKIGKPH 508
AKLSV+PVRRGYWGNKIGKPH
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPH 164
Score = 98.3 bits (234), Expect = 7e-21
Identities = 43/61 (70%), Positives = 52/61 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST T G
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGN 221
Query: 679 F 681
F
Sbjct: 222 F 222
Score = 62.1 bits (144), Expect = 5e-10
Identities = 25/41 (60%), Positives = 36/41 (87%)
Frame = +3
Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I+
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIV 81
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = +1
Query: 496 RKATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFG 675
RK V CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST T
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 676 KF 681
F
Sbjct: 106 NF 107
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 353 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 448
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +2
Query: 251 DLDFFLGPS--LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATA 424
D+D PS ++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV A
Sbjct: 159 DMDREQRPSDEFSERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEA 218
Query: 425 IRGAIILAKLSVLPV 469
I A + + +++ V
Sbjct: 219 ITKAAMNGRRNLVTV 233
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 485 GNKIGKPHPSLARSPASVVL*QSG*FLPL-VVLELCLRQFLRSFFRWLVYRTATPQLVVQ 661
GN++G HP++AR VV+ S F L +L L LR L + + T + V++
Sbjct: 331 GNELGAGHPNVARFSVFVVITASVAFSILATILVLVLRYPLSTLY---TSSTTVIEAVIK 387
Query: 662 LAPL 673
L PL
Sbjct: 388 LTPL 391
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 415 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 299
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 523 PCKGRVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 359
P + VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 103 PRRTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 292 NLIIQGRAEEEIKISNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 146
N +I RAE ++K+S+S+IG+E+ + + S++ G H F
Sbjct: 399 NNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLF 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,574,001
Number of Sequences: 37544
Number of extensions: 556848
Number of successful extensions: 1515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -