Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40195
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 174 6e-44
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.87
SB_52533| Best HMM Match : rve (HMM E-Value=2) 31 1.2
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 31 1.5
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03) 29 3.5
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 3.5
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 4.6
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 4.6
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25) 29 6.1
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 8.1
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 8.1
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 174 bits (424), Expect = 6e-44
Identities = 95/171 (55%), Positives = 111/171 (64%), Gaps = 1/171 (0%)
Frame = +2
Query: 203 QTREHLLVF-FTNQRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 379
+T EH+ +F + +DFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 380 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHPSLARSPASVVL*QSG* 559
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPH + +
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRL 143
Query: 560 FLPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPLGNFAKATYAAIGQ 712
+ + + Q A LGNFAKAT+AAI +
Sbjct: 144 IPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISE 194
Score = 111 bits (267), Expect = 7e-25
Identities = 50/61 (81%), Positives = 52/61 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTSTRG T T G
Sbjct: 124 KPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGN 183
Query: 679 F 681
F
Sbjct: 184 F 184
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 153 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
WVPVTKLGRLV++ KI LE IYLFSLPIKEFEI+
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEII 42
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.87
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 454 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 275
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 274 RAEEEI 257
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.87
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 454 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 275
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 274 RAEEEI 257
R ++E+
Sbjct: 577 RNQDEL 582
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 239 QRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 81 QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 239 QRIRDLDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
QR+R L N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
Length = 1397
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 566 PLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPLGNFAKATYAAIGQD 715
PL L LC L+ +RWL L +L L F KA YA Q+
Sbjct: 1250 PLPTLLLCTFHMLQQLWRWLHESKNNVNLADRLFILNLFKKALYAETEQE 1299
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -1
Query: 427 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 296
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 394
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
Length = 389
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/72 (22%), Positives = 27/72 (37%)
Frame = +3
Query: 351 HLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTRPLQGHR 530
H + T + W+ R + +E ++L LFY S P H
Sbjct: 199 HTISTWTIRGVSRWISYLTRCFTVLYEVFHNILYGLFYSITRGEPAYHSYWTMSPYSAHA 258
Query: 531 QVWFCNSPADSC 566
Q + CN+ ++C
Sbjct: 259 QSYICNTSCEAC 270
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 331 TAHTFQGICCHWRQQRSYW 387
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 329 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 418
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,879,357
Number of Sequences: 59808
Number of extensions: 621446
Number of successful extensions: 2204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2203
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -