Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40195
         (835 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   173   2e-43
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   173   2e-43
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   173   2e-43
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   173   2e-43
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   173   2e-43

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/85 (95%), Positives = 83/85 (97%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG
Sbjct: 77  IDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 136

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 137 AIILAKLSVVPVRRGYWGNKIGKPH 161



 Score =  112 bits (269), Expect = 7e-25
 Identities = 50/61 (81%), Positives = 54/61 (88%)
 Frame = +1

Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
           K   VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVP+KLL MAG++DCYTS RGSTGT G 
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRKLLTMAGIEDCYTSARGSTGTLGN 218

Query: 679 F 681
           F
Sbjct: 219 F 219



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 35/41 (85%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEI+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEII 77


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/85 (95%), Positives = 83/85 (97%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG
Sbjct: 77  IDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 136

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 137 AIILAKLSVVPVRRGYWGNKIGKPH 161



 Score =  113 bits (272), Expect = 3e-25
 Identities = 51/61 (83%), Positives = 54/61 (88%)
 Frame = +1

Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
           K   VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS RGSTGT G 
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGN 218

Query: 679 F 681
           F
Sbjct: 219 F 219



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 35/41 (85%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEI+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEII 77


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/85 (95%), Positives = 83/85 (97%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG
Sbjct: 77  IDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 136

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 137 AIILAKLSVVPVRRGYWGNKIGKPH 161



 Score =  113 bits (272), Expect = 3e-25
 Identities = 51/61 (83%), Positives = 54/61 (88%)
 Frame = +1

Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
           K   VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS RGSTGT G 
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGN 218

Query: 679 F 681
           F
Sbjct: 219 F 219



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 35/41 (85%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEI+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEII 77


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/85 (95%), Positives = 83/85 (97%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG
Sbjct: 77  IDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 136

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 137 AIILAKLSVVPVRRGYWGNKIGKPH 161



 Score =  113 bits (272), Expect = 3e-25
 Identities = 51/61 (83%), Positives = 54/61 (88%)
 Frame = +1

Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
           K   VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS RGSTGT G 
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGN 218

Query: 679 F 681
           F
Sbjct: 219 F 219



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 35/41 (85%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEI+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEII 77


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  173 bits (421), Expect = 2e-43
 Identities = 81/85 (95%), Positives = 83/85 (97%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +DFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG
Sbjct: 77  IDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 136

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 137 AIILAKLSVVPVRRGYWGNKIGKPH 161



 Score =  113 bits (272), Expect = 3e-25
 Identities = 51/61 (83%), Positives = 54/61 (88%)
 Frame = +1

Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
           K   VPCKVTGKCGSV+VRLIPAPRGTGIVSAPVPKKLL MAG++DCYTS RGSTGT G 
Sbjct: 159 KPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGN 218

Query: 679 F 681
           F
Sbjct: 219 F 219



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 35/41 (85%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEI+
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEII 77


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,849,350
Number of Sequences: 53049
Number of extensions: 925444
Number of successful extensions: 3802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3124
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)