Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40195
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 144 7e-35
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of... 29 3.1
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 5.4
U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical p... 29 5.4
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 7.2
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 7.2
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 144 bits (349), Expect = 7e-35
Identities = 81/147 (55%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Frame = +2
Query: 275 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 454
+L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97 NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156
Query: 455 SVLPVRRGYWGNKIGKPH--PSLARSPASVVL*QSG*FLPLV-VLELCLRQFLRSFFRWL 625
+V+PVRRGYWGNKIG PH P + V+ + +P + +
Sbjct: 157 AVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVR---LIPAPRGTGIVSAPVPKKLLHMA 213
Query: 626 VYRTATPQLVVQLAPLGNFAKATYAAI 706
A LGNFAKATYAA+
Sbjct: 214 GIEDCYTAAKGSTATLGNFAKATYAAL 240
Score = 105 bits (252), Expect = 4e-23
Identities = 46/57 (80%), Positives = 50/57 (87%)
Frame = +1
Query: 511 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGKF 681
VPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+ +GST T G F
Sbjct: 176 VPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNF 232
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +3
Query: 138 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFEI+
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEII 91
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 532 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTF 672
+C + V PRG G+ P K+ + G++D Y GST +
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGSTKNY 261
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 532 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTF 672
+C + V PRG G+ P K+ + G++D Y GST +
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGSTKNY 261
>AC006790-7|AAF60731.1| 547|Caenorhabditis elegans Suppressor of
mec and unc defectsprotein 2 protein.
Length = 547
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 132 RAHDHGRDHDRVHE-DRRGLYLHRVIRNRRENRHVHRLEQR 13
R+ D RD DR + D R Y + +RRE R +QR
Sbjct: 350 RSRDRSRDRDRDRDRDNRDRYFEKSANSRREEEQNRREQQR 390
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 478 TSSNW*NRQLSKDNSASNGSG 416
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>U55363-10|AAL11103.1| 364|Caenorhabditis elegans Hypothetical
protein ZC404.13 protein.
Length = 364
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 629 YRTATPQLVVQLAPLGNFAKATYAAIGQDICLPHS*LCLKGTSPLTKSP 775
Y TA QL+V + A + Y A+G C S + K T +SP
Sbjct: 108 YITAYAQLIVDYFQIAFHASSLYLAVGMSFCRAISLVLTKDTRDTWQSP 156
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 435
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 292 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 435
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,308
Number of Sequences: 27780
Number of extensions: 445752
Number of successful extensions: 1301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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