Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40195
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 164 6e-41
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 164 7e-41
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 163 1e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 163 1e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 163 1e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 163 1e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g72390.1 68414.m08373 expressed protein 29 2.9
At2g27420.1 68415.m03314 cysteine proteinase, putative contains ... 29 3.8
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 5.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.6
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 8.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 8.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 8.8
At3g01450.1 68416.m00069 expressed protein 28 8.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 164 bits (399), Expect = 6e-41
Identities = 72/85 (84%), Positives = 81/85 (95%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRG
Sbjct: 79 IDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRG 138
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+P+RRGYWGNKIGKPH
Sbjct: 139 AIILAKLSVVPIRRGYWGNKIGKPH 163
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T G
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 679 F 681
F
Sbjct: 221 F 221
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/39 (66%), Positives = 36/39 (92%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++I+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQII 79
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 164 bits (398), Expect = 7e-41
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 88 IDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 147
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 148 AIILAKLSVVPVRRGYWGNKIGKPH 172
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T G
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 679 F 681
F
Sbjct: 230 F 230
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/39 (58%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++WVPVTKLGRLV G I ++E IYL SLP+KE++I+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQII 88
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T G
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 F 681
F
Sbjct: 229 F 229
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T G
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 F 681
F
Sbjct: 229 F 229
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T G
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 F 681
F
Sbjct: 229 F 229
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGTFGK 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST T G
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 F 681
F
Sbjct: 229 F 229
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 284 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 463
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 464 PV 469
V
Sbjct: 209 QV 210
Score = 35.5 bits (78), Expect = 0.044
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGS 660
K + P + G G+ V L PA GTG+++ + +L+MAGV++ GS
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGS 267
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 673 QRCQLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQNHT 533
Q+ QL H+ + P+ QPS++ A Q Q Q HE + A Q T
Sbjct: 935 QQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQQAT 982
>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 348
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -3
Query: 599 TGADTIPVPRGAGISRTVTEPHLPVTLQGTGVAFRSCYPSNLF 471
+G +T+P+ + + V++ + V ++GTG AFR Y +F
Sbjct: 240 SGYETVPMNNEEALLQAVSQQPVSVGIEGTGAAFRH-YSGGVF 281
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 492 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 313
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 312 CTGMIFRTSSFR 277
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 350 AFVAIGDNNGHIGLGVKCSKE 412
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 114 RDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 7
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 114 RDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 7
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 114 RDHDRVHEDRRGLYLHRVIRNRRENRHVHRLEQRPP 7
RDHDR +DR G R R+R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 495 ILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVC 316
+LL Q L++ + A + VA + H +P + P L P N R+R A C
Sbjct: 165 LLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKASTC 223
Query: 315 F 313
F
Sbjct: 224 F 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,525,707
Number of Sequences: 28952
Number of extensions: 428370
Number of successful extensions: 1119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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