Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40194
         (831 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1EWK0 Cluster: GTP-binding signal recognition particle...    36   1.2  
UniRef50_A5DEF9 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q5RIU8 Cluster: Novel protein similar to vertebrate dis...    34   3.8  
UniRef50_A0CPJ1 Cluster: Chromosome undetermined scaffold_23, wh...    34   5.0  
UniRef50_A6QAR7 Cluster: Signal transduction protein; n=1; Sulfu...    33   6.6  
UniRef50_Q23PX5 Cluster: GAF domain containing protein; n=1; Tet...    33   6.6  
UniRef50_Q3V7T7 Cluster: Flagellar biosynthetic protein; n=1; Ge...    33   8.8  
UniRef50_Q8IG38 Cluster: Putative uncharacterized protein; n=2; ...    33   8.8  
UniRef50_Q17BU0 Cluster: Zinc finger protein; n=2; Aedes aegypti...    33   8.8  

>UniRef50_Q1EWK0 Cluster: GTP-binding signal recognition particle
           SRP54, G-domain; n=1; Clostridium oremlandii OhILAs|Rep:
           GTP-binding signal recognition particle SRP54, G-domain
           - Clostridium oremlandii OhILAs
          Length = 409

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -3

Query: 268 RTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSNV 89
           R+ +NNEH+E ++KLL+     EV    +A  K  DL+ +   ++F D+ + +   L  V
Sbjct: 304 RSHKNNEHVEELSKLLKEIHEKEVCLVVSATTKNSDLRDILHTYNFIDDYKIIFTKLDEV 363


>UniRef50_A5DEF9 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 240

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 250 EHMETVAKLLRLAVNNEVDKQFAALNKIED---LKCVYCNFDFRDNREAVKHALSNVYHQ 80
           + +E V ++L     +  D +F      ED     CV CN  F+  R+   H LSN  H+
Sbjct: 17  DELEEVERILEEDFRSSSDSEFDEFAPPEDDDYYDCVVCNKQFKTKRQFEMHELSN-KHK 75

Query: 79  SAVAETKLNANKADI 35
            AV   K +  K  I
Sbjct: 76  KAVKRLKWSMRKEGI 90


>UniRef50_Q5RIU8 Cluster: Novel protein similar to vertebrate
           discoidin domain receptor family, member 2; n=4; Danio
           rerio|Rep: Novel protein similar to vertebrate discoidin
           domain receptor family, member 2 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 804

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +1

Query: 397 CRVTKVLLLSDMVEQDLSGPFQRHIAAGAEIA---YFPGRLIKFSMITWSRLLTGLPTLA 567
           C+     LLSD    + +G F R+      ++     P  L K  M  WSR +T  P+  
Sbjct: 732 CKEQPYSLLSDEQVIENTGEFFRNQGRQIFLSAPPLCPSSLFKLMMRCWSRDITDRPSFN 791

Query: 568 KYLDQLKSFGPHS 606
           K    L++F PHS
Sbjct: 792 KLHQALRTFAPHS 804


>UniRef50_A0CPJ1 Cluster: Chromosome undetermined scaffold_23, whole
           genome shotgun sequence; n=6; Oligohymenophorea|Rep:
           Chromosome undetermined scaffold_23, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 346

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 481 AEIAYFPGRLIKFSMITWSRLLTGLPTLAKYLDQLKSFGPHSSGICPFGSSLSFLSTN 654
           AEI YFP +++   + T+  +LT   +L++   ++    P  +G+CP+  +    +T+
Sbjct: 230 AEIPYFPVKIVNCFLSTYLAILTSY-SLSQVTREMVDLWPKQNGVCPYDGNYRKAATH 286


>UniRef50_A6QAR7 Cluster: Signal transduction protein; n=1;
           Sulfurovum sp. NBC37-1|Rep: Signal transduction protein
           - Sulfurovum sp. (strain NBC37-1)
          Length = 958

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = -3

Query: 310 LPRIRGGAFVREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDF 131
           L RI G  FV   +      E  E   KLL + +   +D Q   LN    +       D 
Sbjct: 601 LARIGGDEFVVIMKLKMHKKEAGEQAEKLLDV-IREPIDIQNYHLNTTASIGIAIYPDDG 659

Query: 130 RDNREAVKHALSNVYH 83
           +D  E VKHA S +YH
Sbjct: 660 KDKNEIVKHADSAMYH 675


>UniRef50_Q23PX5 Cluster: GAF domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: GAF domain containing
           protein - Tetrahymena thermophila SB210
          Length = 906

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 17/77 (22%), Positives = 39/77 (50%)
 Frame = -3

Query: 283 VREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKH 104
           ++  R T +NNEH   +++ ++ +VN +  KQ   +  ++++     NF  + N   +  
Sbjct: 192 LKHQRFTKQNNEHFYKISQQIKESVNLKQTKQQIQIEHLKNVINRNKNFQLKFNNSQLNF 251

Query: 103 ALSNVYHQSAVAETKLN 53
             SN  ++   +++K N
Sbjct: 252 VQSNTENEQTESDSKKN 268


>UniRef50_Q3V7T7 Cluster: Flagellar biosynthetic protein; n=1;
           Geobacillus kaustophilus|Rep: Flagellar biosynthetic
           protein - Geobacillus kaustophilus
          Length = 409

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 286 FVREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNF 137
           FV    R FRN ++++ + + L      E    FAA  K +D+K +Y +F
Sbjct: 296 FVDTAGRNFRNPQYVDELQQTLEFDSETETFLVFAATGKYDDMKMIYNHF 345


>UniRef50_Q8IG38 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 346

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 18/91 (19%), Positives = 43/91 (47%)
 Frame = -3

Query: 283 VREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKH 104
           ++EH+R  ++  + E   + ++   N E+++     +K ++L C  CN  FR     +KH
Sbjct: 194 MKEHKREEKHCPYKE--CRGIKFRFNRELNEHVRLQHKSKELSCCVCNMVFRQLSAKIKH 251

Query: 103 ALSNVYHQSAVAETKLNANKADIISVYMKGN 11
                + + +     L ++K   ++  ++ N
Sbjct: 252 --EKTHEKGSPISNILKSSKCSAVNRQVEKN 280


>UniRef50_Q17BU0 Cluster: Zinc finger protein; n=2; Aedes
           aegypti|Rep: Zinc finger protein - Aedes aegypti
           (Yellowfever mosquito)
          Length = 717

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 157 KCVYCNFDFRDNREAVKHALSNV 89
           KC YCN  FRD  + ++H+ S+V
Sbjct: 579 KCAYCNLSFRDTTDLLRHSRSHV 601


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,208,726
Number of Sequences: 1657284
Number of extensions: 17727791
Number of successful extensions: 57880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57865
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)