Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40194
         (831 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.74 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   5.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   6.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -3

Query: 160 LKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKL 56
           LKC++C   FR   E   H     ++ + +++ ++
Sbjct: 479 LKCMWCGQSFRSLAEMTSHMQQTQHYTNIISQEQI 513



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 748 LNCRFCKQYIETAEATILHLLDEKH 674
           L C +CKQ   +  A   H+ + KH
Sbjct: 378 LKCVWCKQSFPSLAAMTTHMKEAKH 402


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 175 NKIEDLKCVYCNFDFRDNREAVKHALSNVYH 83
           NK E   C YCN  F D   AV + +   YH
Sbjct: 466 NKEEGNSCQYCNIAFGD---AVLYTIHMGYH 493


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 598 DQRT*AGPSIWPAW 557
           +++T + P +WPAW
Sbjct: 180 EKKTESQPMLWPAW 193


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 558 HAGQILGPAQVLWSP 602
           H G  +GP Q +W P
Sbjct: 33  HQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 558 HAGQILGPAQVLWSP 602
           H G  +GP Q +W P
Sbjct: 33  HQGAQMGPEQQMWEP 47


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
 Frame = +2

Query: 2   QDVISLHVNAYYIRFVRVQLRLRDGALVVHIRKRMFDGLTVIPKIEVAINAFQIFDFIQC 181
           Q+V+ +    Y +  V V+  +    L +  R R+   ++ + K E    +  +   + C
Sbjct: 343 QEVVRVKKPHYELNMVEVRSPVTPADLRLLTRGRLVLTVSSVSKPEALRLSGSVVTKVTC 402

Query: 182 RKLFVDFVVHGQTEKFGY-GLHVFVVSKCSTMFANEGTATYSGQIEQM*KLPND 340
                       T +FG  GL    ++       NEG+  Y+ QIE +   P++
Sbjct: 403 ELFQATLSSSSDTNRFGTSGLAWLYLN-------NEGSLVYNVQIENLKTTPDN 449


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 302 NTWRCLRSRTSSNISKQRTHGDRSQTSPSGREQRSRQTICG 180
           NT     S++S  I  +RT  +     P G E+ ++   CG
Sbjct: 539 NTITRASSQSSVTIPFERTFRNLDLNRPQGGEELAQFNFCG 579


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 523 MITWSRLLTGLPTLAKYLDQ 582
           +I WS  L+  P + KYLD+
Sbjct: 452 VIIWSSNLSKRPYIYKYLDK 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,119
Number of Sequences: 336
Number of extensions: 4386
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)