Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40194
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    29   1.1  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.9  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   3.3  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    27   4.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   4.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.7  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   5.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   7.5  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    26   7.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   10.0 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   10.0 

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 636 FIFKYKSSESMAKCFSSNKWSMVASAVSMYCLQNRQLSP 752
           F+FKY  S+ + K  SS++++  A  +  Y +QN    P
Sbjct: 34  FLFKYWDSKPLGKNVSSDQFAETAIQMLEYFIQNNYTGP 72


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +1

Query: 208 SRPDGEVWLRSPCVRCFEMFDDVRERRHRH 297
           S P+G+  + S   +C ++ +++R+ +H+H
Sbjct: 413 SVPEGQELVNSLLTQCHQLIEELRDEKHQH 442


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 271 DVRERRHRHVFGANRTNVKVTERRVVLGGAAVVFVEE 381
           D+RER  R V  +N++   VT   + +GGA  V +++
Sbjct: 574 DMRERLGRMVVASNKSGEPVTADDLGVGGALTVLLKD 610


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 734 LQTIHRDRRSDHTPLIRRETLSHALRRFVLKNESD 630
           LQTIH +       ++R E L HA+ +   K E+D
Sbjct: 240 LQTIHEEYEQQQAHIVRMEELIHAVEK-ERKTETD 273


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 594 WSPFFRNLPVRLVAFIFKYK--SSESMAKCFSSNKWSMVASAVSMY 725
           W   F NLP R+   +  YK  S+E   K +    W+ +   +SMY
Sbjct: 694 WRVIFSNLPRRIYFTLLAYKDLSTEFKPKIYVGQIWNSI--MISMY 737


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
 Frame = +1

Query: 259 EMFDDVRERRHRHVFGANRTNVK----VTERRVVLGGAAVVFVEEGELLWCRVTKVLLLS 426
           +   D+ ER+ +H+F ++ + VK    V E+  ++   A +  +  ++          + 
Sbjct: 168 QALSDIEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQ 227

Query: 427 DMVEQDLSGPFQRHIAAGAEIAYFPGRLIKFSMI-TWSRLLTGLPTLAKYLDQ 582
           D+ E+ L+G  Q++     +I  F  +   +S     S++L   PT  K L++
Sbjct: 228 DL-EKKLAGLAQQNTELNEKIQLFEQKRSNYSSDGNISKILETDPTSIKELEE 279


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 160 DLRFYSVPQIVCRLRCSRPDGEVWLRSPCV 249
           + +   +P +      S P GEVW+R P V
Sbjct: 471 EFKLVDIPDLGYYTDSSPPRGEVWIRGPAV 500


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
 Frame = +3

Query: 450 GALSASYRSRCRNCLL----SRKVNKVLYDNVVAVVNRFAHAGQILGPAQVLWSPFFRNL 617
           G LS    +R   C+L    +RK+ K+L+ N   ++N       +L  A +     F++L
Sbjct: 609 GWLSIFAIARIYRCILLIPYTRKIAKLLFSNFKQLLNLMLFLVIVLFIASLCAVRLFQDL 668

Query: 618 P------VRLVAFIFKYKSSESMAKCFSSNKWSMVASAV 716
           P         ++F   Y+S   M +  +S  W+ V  A+
Sbjct: 669 PNDGDSDDDAISFATTYESFLYMYQILTSENWTDVMFAI 707


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 548 PVCPRWPNTWTSSSPLVPILQEF 616
           PVC   PN +  + P +PI+Q F
Sbjct: 61  PVCIYPPNIYLYAKPTMPIIQSF 83


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 136 DFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGNYI 5
           D   N E  K  + N Y       TKL   KA + S   +GN +
Sbjct: 595 DVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGNVL 638


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 114 ASRLSRKSKLQ*THFRSSILFSAANCLSTSLFTARRRSLATVSMCS 251
           A    R+SK+Q     SS  FS +N  + S F  +  SLA+ S  S
Sbjct: 55  AQAFLRESKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKIS 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,046
Number of Sequences: 5004
Number of extensions: 73947
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)