Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40194
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 30 2.0
01_05_0271 + 20276965-20278674 30 2.6
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 29 3.4
08_02_0858 + 21943679-21943716,21944009-21944177,21945996-21946025 29 4.5
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 29 6.0
10_01_0208 - 2228234-2228254,2228494-2228709,2228796-2228946,222... 28 7.9
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 28 7.9
07_01_1129 + 10466943-10467326,10467440-10467574,10467670-104679... 28 7.9
04_04_0236 + 23825368-23825763,23826229-23828667 28 7.9
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 170 FIQCRKLFVDFVVHGQTEKFGYGLHVFVVSKCSTMFANEGTATYSGQI 313
F +C + VVHG K G+ VFV S M+AN YS ++
Sbjct: 415 FAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKV 462
>01_05_0271 + 20276965-20278674
Length = 569
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 502 GRLIKFSMITWSRLLTGLPTLAKYLDQLKSF 594
G L+ ++TWS L+TGL + KY + F
Sbjct: 279 GNLLDADLVTWSSLITGLLHICKYEESFGLF 309
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 278 RTSSNISKQRTHGDRSQTSPSGREQRSRQTICGT 177
+ SSN + +R+ G +S S G E+ S T CGT
Sbjct: 322 KASSNKTVERSLGGKSDPSVLGGERHSMMTSCGT 355
>08_02_0858 + 21943679-21943716,21944009-21944177,21945996-21946025
Length = 78
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 160 LKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANKADIISVYMKGN 11
++C C+ F RE V H SN +A+ K A KA + + KGN
Sbjct: 27 IECPKCHGVFNTRREFVNHKCSNT-RLFMLAQAKKAAKKAVLKQIRNKGN 75
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 462 ASYRSRCRNCLLSRKVNKVLYDNVVAVVNRFAHAGQILGPAQVLWS 599
A+Y + R+CLL +V N AV R +H G ++ P +WS
Sbjct: 618 AAYSAAIRSCLL--RVGTPSPPNPPAVQQRRSHGGGMIDPVGEVWS 661
>10_01_0208 -
2228234-2228254,2228494-2228709,2228796-2228946,
2229031-2229268,2229394-2229604,2229765-2229943,
2230041-2230151,2230445-2231240
Length = 640
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +2
Query: 8 VISLHVNAYYIRFVRVQLRLRDGALVVHIRKRMFDGLTVIPKIEVAINAFQIFDFIQCRK 187
V+ + YY R+ R + R +D + R R F G +I ++E I+ F +F+F + K
Sbjct: 284 VVLCLIVCYYCRWSR-RFR-KDRVRLREKRSRRFRGDELICEMEGEISEFSVFEFREVIK 341
Query: 188 LFVDFVVHGQTEKFGYG 238
+F + + G+G
Sbjct: 342 ATDNFSEENKLGEGGFG 358
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 157 KCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLN 53
+C CN F+D V+H LS +HQ K+N
Sbjct: 342 ECQKCNLTFQDQSAYVQHQLS--FHQRKAKRRKVN 374
>07_01_1129 +
10466943-10467326,10467440-10467574,10467670-10467972,
10468155-10468247
Length = 304
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 250 EHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNR 119
EH + KLL V NE+D + K+ + C+ F R +R
Sbjct: 76 EHAPLLEKLLNFGVRNELDVSIISAPKLVTVGCLCQQFCHRHSR 119
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 396 VPRYEGASSIGYG*TGPVGALSASYRSRC 482
VPR+ A + GYG G VGA A RC
Sbjct: 90 VPRWMTALAAGYGEGGGVGAADARKMDRC 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,046,520
Number of Sequences: 37544
Number of extensions: 496618
Number of successful extensions: 1507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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