Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40194
(831 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 31 0.87
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 29 3.5
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 29 4.6
SB_4110| Best HMM Match : NAPRTase (HMM E-Value=0.011) 29 6.1
SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12) 29 6.1
SB_50374| Best HMM Match : OTU (HMM E-Value=0.036) 28 8.1
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.1
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 31.5 bits (68), Expect = 0.87
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 624 RLVAFIFKYKSSESMAKCFSSNKWSMVASAVSMYCLQNRQLSPDSGAVNVNEPGKGIFAF 803
R V + FK KSS M + KW+ VA S Y L L P V +PG G + +
Sbjct: 385 RFVEWFFKIKSSSGMERSIQDTKWTRVA-LKSGYVL---VLKPRDEVKPVPKPGNGSY-W 439
Query: 804 ISFDALK 824
DAL+
Sbjct: 440 SLMDALE 446
>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -2
Query: 734 LQTIHRDRRSDHTPLIRRETLSHALRRFVLKNESDEPNGQIPEEWGPKDLSWSKYLASVG 555
+Q++ R R D TP R++ R LKN+ E +P G D + L
Sbjct: 64 VQSLARLERQDQTPESRKKVAELQFRITELKNKLKELEMSLPSSAGITDSIFHGILVWYY 123
Query: 554 KPVNNRDHVIIEN 516
+ ++H++I N
Sbjct: 124 STLTLQEHILIAN 136
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 411 LRNAAPKK-LALLYKNYCRPSEYYASFGNFYICSICPE 301
L N+ P LAL YK C+ Y A G +++C+ CP+
Sbjct: 163 LENSKPYVYLALHYKAACKVGTYKAVHG-YFVCASCPD 199
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 352 GGAAVVFVEEGELLWCRVTKVLLLSDMVEQ--DLSGPFQRHIAAGA-EIAYFPGRLIKF 519
GG V +EG L +C + L + V Q DL+ P R++ AG + Y RL+ F
Sbjct: 1124 GGGVYVLEDEGALTYCGLQGFLSVLTNVRQHNDLAHPICRNLRAGDWMMGYVVDRLMPF 1182
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 754 SGLNCRFCKQYIETAEATILHLLDEKH 674
SG NCR CK +I + H+ KH
Sbjct: 589 SGFNCRLCKTFIMNGADVMKHVKARKH 615
>SB_4110| Best HMM Match : NAPRTase (HMM E-Value=0.011)
Length = 283
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +1
Query: 409 KVLLLSDMVEQDLSGPFQRHIAAGAEIAYFPGRLIKFSMITWSRLLTGLPTLAKYLDQLK 588
KV L ++EQ+++ +A A A FPG + + T+ L +G+P L
Sbjct: 160 KVAPLLSVLEQEVNSG--ELVAFSAYAAAFPGSFLAL-VDTYHVLRSGVPCYCAVALALN 216
Query: 589 SFGPHSSGICPFGSSLSFLS 648
FG +SG+ L++LS
Sbjct: 217 DFGYRASGMRLDSGDLAYLS 236
>SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)
Length = 124
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 271 DVRERRHRHVFGANRTNVKVTERRVVLGGAAVVFVEEGELLWCRVTKVLLLSDMVEQD 444
+ RER H+ TN++V + L + E++W + LLSDMVEQ+
Sbjct: 53 NARERNRVHILN---TNIQVLRELIPLPPQEKEPTKT-EIIWMAAKYIALLSDMVEQE 106
>SB_50374| Best HMM Match : OTU (HMM E-Value=0.036)
Length = 348
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 235 VAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALS 95
+ + L+LA + + ++Q+ L+K L+C+ CN A +HA+S
Sbjct: 238 LTEALQLAADAKKNRQYTNLSKFT-LRCLVCNTPLTGQIAAQQHAVS 283
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = -3
Query: 271 RRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSN 92
R FR + H++ ++K +++ DK A C YC+F F ++ KH
Sbjct: 716 RSEFRRH-HLQHLSKA---ELSDLADKILAITPGYFPFLCRYCDFSFESSKALKKHHHEK 771
Query: 91 VYHQSAVAETKLNANKAD 38
+ S + + LN + +D
Sbjct: 772 HRNNSKIDSSNLNYSGSD 789
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,518,973
Number of Sequences: 59808
Number of extensions: 578787
Number of successful extensions: 1799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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