Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40194
         (831 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   1.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   4.9  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    23   8.6  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 592  FGPHSSGICPFGSSLSFLSTNRLRAWLSVSRLISGVWSLRRSLCIVCR 735
            FGP  SG  P GS    L+        SV R IS   +    +C+ CR
Sbjct: 1142 FGPGVSG--PGGSKTPILNRKEKPKSCSVCRQISPTVNSTEPVCVKCR 1187


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 118  EAVKHALSNVYHQSAVAETKLNANKADI 35
            E   + L ++ +Q ++ E KLNANK ++
Sbjct: 1059 ELDSYKLPDLQYQISILEEKLNANKPNL 1086


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 284  RSRTSSNISKQRTHG-DRSQTS---PSGREQRSRQTICGTE*NRRSEMR 150
            RSR+ S  S+ R+    RSQ++    SG   RSR     +  +RRS  R
Sbjct: 1118 RSRSGSGGSRSRSRSRSRSQSAGSRKSGSRSRSRSGSQASRGSRRSRSR 1166


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,541
Number of Sequences: 2352
Number of extensions: 18846
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)