Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40194
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.1  
U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa ...    28   7.1  
AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical ...    28   9.4  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    28   9.4  

>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/91 (19%), Positives = 43/91 (47%)
 Frame = -3

Query: 283 VREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKH 104
           ++EH+R  ++  + E   + ++   N E+++     +K ++L C  CN  FR     +KH
Sbjct: 194 MKEHKREEKHCPYKE--CRGIKFRFNRELNEHVRLQHKSKELSCCVCNMVFRQLSAKIKH 251

Query: 103 ALSNVYHQSAVAETKLNANKADIISVYMKGN 11
                + + +     L ++K   ++  ++ N
Sbjct: 252 --EKTHEKGSPISNILKSSKCSAVNRQVEKN 280


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 160 LKCVYCNFDFRDNREAVKHALSNVYH 83
           L+C++C ++ R NR  + H L  ++H
Sbjct: 305 LQCIFCRYNARGNRSKIIHHLYMIHH 330


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -3

Query: 256 NNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALSN 92
           NNEH+     +++   NNE +K +   +  +D +C+  +  +      V++ + N
Sbjct: 410 NNEHLHDEYNIIQTEDNNEEEKHYTEYSIDQDFECIDDDKHYSGKHSPVENMIVN 464


>U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa
           synthetase familyprotein 17 protein.
          Length = 718

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 656 RFVLK-NESDEPNGQIPEEWGPKDLSWSKYLASVGKPVN 543
           R VLK ++  + NG+I E+W   D  W  Y A V K VN
Sbjct: 111 REVLKVHKEKQSNGKIFEKWQMGDYHWRSY-AQVDKRVN 148


>AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical
           protein Y47D3B.9 protein.
          Length = 761

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 205 NEVDKQFAALNKIEDLKCVYCNFDFRDNREAVKHALS--NVYHQSAVAE 65
           +E+ + +  LN+ ++++C+YC    + N  + K      N YHQ  + +
Sbjct: 353 SEIWEHYKCLNEKQNVECIYCWKVLKRNDSSTKSMWGHMNAYHQDILRD 401


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/73 (20%), Positives = 31/73 (42%)
 Frame = -3

Query: 304 RIRGGAFVREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRD 125
           R    A +R H R+    +         +LA NN ++  ++A   +     ++  FD   
Sbjct: 18  RWNADAHLRAHERSANVEDDAIMRVDTCQLAANNPIEDFYSAAKCLSSRAFLFGVFDGHG 77

Query: 124 NREAVKHALSNVY 86
            ++  +H  +N+Y
Sbjct: 78  GQQCSRHISTNLY 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,540,268
Number of Sequences: 27780
Number of extensions: 430668
Number of successful extensions: 1471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)