Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40194
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa...    31   0.71 
At2g33680.1 68415.m04128 pentatricopeptide (PPR) repeat-containi...    31   1.2  
At5g35760.1 68418.m04284 expressed protein ; expression supporte...    30   1.6  
At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138...    29   2.9  
At5g47440.1 68418.m05849 expressed protein strong similarity to ...    29   2.9  
At5g18880.1 68418.m02243 expressed protein ; expression supporte...    29   3.8  
At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family...    29   5.0  
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa...    28   8.7  
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa...    28   8.7  
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa...    28   8.7  
At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containi...    28   8.7  
At2g25280.1 68415.m03024 expressed protein                             28   8.7  
At1g55580.1 68414.m06361 scarecrow transcription factor family p...    28   8.7  

>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 525

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 241 ETVAKLLRLAVNNEVDKQFA-ALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 65
           E +++ L+ ++  E D+  + +L K +D+KC  C  ++ D  E       ++YH S V +
Sbjct: 445 EALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIPCQHMYHVSCVQQ 504


>At2g33680.1 68415.m04128 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 727

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 206 VHGQTEKFGYGLHVFVVSKCSTMFANEGT 292
           VHG T K G+GL V + S  STM++  G+
Sbjct: 445 VHGHTIKHGFGLEVPIGSALSTMYSKCGS 473


>At5g35760.1 68418.m04284 expressed protein ; expression supported
           by MPSS
          Length = 177

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 195 STSLFTARRRSLATVSMCSLFRNVRRCSRTKAPPRIRGKSNKC 323
           S  LF    + L++ S  ++    RRC   K PP   GKS+ C
Sbjct: 116 SEHLFAKLMKPLSSFSCKAIRLKSRRCGGEKLPPDTNGKSSTC 158


>At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter-related protein'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.;
           expression supported by MPSS
          Length = 559

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 112 RPHGYPENRSCNKRISDLRFYSVPQIVCRLRCSRPDG 222
           +  GYPE+R   +R  D+  Y VP+ +CR R  R  G
Sbjct: 522 KSQGYPESRR-GRRDRDVIAYPVPECMCRHRKHRSVG 557


>At5g47440.1 68418.m05849 expressed protein strong similarity to
           unknown protein (pir||G71442)
          Length = 406

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 678 FSSNKWSMVASAVSMYCLQNRQLSPDSGAVNVNEPGKGIFAFISFDAL 821
           F S  WS+ AS +S    Q ++   D  +V+ N P +G F  ++ D L
Sbjct: 52  FLSRSWSLSASEISKALAQKQRQQRDLFSVSQNSP-RGFFQDVAADPL 98


>At5g18880.1 68418.m02243 expressed protein ; expression supported
           by MPSS
          Length = 295

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 481 AEIAYFPGRLIKFSMITWSRLLTGLPTLAKYLDQLKSFG---PHSSGICPFG 627
           A++ +F   + +FS+ITW   L  LPT     D+L+ +G   P S  +C  G
Sbjct: 128 AKVVWFKEYIPRFSLITWMSFLERLPT----RDRLRGWGMNIPSSWVLCSNG 175


>At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 331

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 403 VTKVLLLSDMVEQDLSGPFQRHIA-AGAEIAYFPGRLIKFSMITWSRLLTGLPTLAKYLD 579
           +T+   + D   +D + P QR     G E A  P    + S I W  LL G       L+
Sbjct: 226 LTEKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERKSQINWLFLLLGQTLGFCTLE 285

Query: 580 QLKSFGPHS 606
           QLK+F  HS
Sbjct: 286 QLKNFCKHS 294


>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/91 (18%), Positives = 32/91 (35%)
 Frame = -3

Query: 307 PRIRGGAFVREHRRTFRNNEHMETVAKLLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFR 128
           P   G  F  E   +  +    E       +   N + +++   +  E  +CV C    +
Sbjct: 176 PSSHGDIFTYEELLSITDETGDERTGLSEEVIDENLIRRKYEKRSDDETKRCVICQQKLK 235

Query: 127 DNREAVKHALSNVYHQSAVAETKLNANKADI 35
           DN E  K    + +H   +    +  NK  +
Sbjct: 236 DNEEVSKLGCGHDFHFGCIKNWLMVTNKCPL 266


>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 520

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 241 ETVAKLLRLAVNNEVDKQF-AALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 65
           E + K L+ ++    D+     LNK +D+KC  C  ++ D  E       + YH S   +
Sbjct: 438 EALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQ 497


>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 520

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 241 ETVAKLLRLAVNNEVDKQF-AALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAE 65
           E + K L+ ++    D+     LNK +D+KC  C  ++ D  E       + YH S   +
Sbjct: 438 EALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQ 497


>At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 601

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 373 VEEGELLWCRVTKVLLLSDMVEQDLSGPFQRHIAAGA--EIAYFPGRLIKFSMITWSRLL 546
           +E+GE +WC+       +D+     S     ++  G   E     G++ K  +I W+ ++
Sbjct: 132 LEKGEAVWCKAVDFGYKNDVFV--CSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMV 189

Query: 547 TGLPTLAKYLDQLKSF 594
           TG     K L  ++ +
Sbjct: 190 TGFAQAGKSLKAVEFY 205


>At2g25280.1 68415.m03024 expressed protein
          Length = 291

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 562 LAKYLDQLKSFGPHSSGICPFGSSLSFL 645
           LAKY+D  K+F   SS  C +GS  +++
Sbjct: 169 LAKYVDDPKNFFSVSSDFCHWGSRFNYM 196


>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 150 THFRSSILFSAANCLSTSLFTARRRSLATVSMCS 251
           +H    +LF+AAN +S S FTA +  L+ +S+ S
Sbjct: 38  SHHLRRLLFTAANFVSQSNFTAAQNLLSILSLNS 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,395,699
Number of Sequences: 28952
Number of extensions: 397243
Number of successful extensions: 1363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)