Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40193
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    29   1.0  
At4g15840.1 68417.m02409 expressed protein                             29   1.0  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    29   1.8  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.1  
At5g07790.1 68418.m00892 expressed protein                             27   5.4  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.4  

>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 359 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTCCRPL 240
           K E     SDV+NG C +S  G G T    V+C T   PL
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGTSRTPL 49


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 154 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 246
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = -1

Query: 263 CDTCCRPLNFRSMLVQQRLCFLPLFPLS*NRAREPLMES---TDPQCHILQHRRPRLPLM 93
           CD CC  L+ R +L +      P   +  N+    ++ +   + P CH   H   R P  
Sbjct: 576 CDDCCTTLHVRCLLGEDMYMSKPGHTIMNNKREVHILPNNTRSRPFCH--HHDEDRCPYK 633

Query: 92  QLEAPCSFNFCSLRAI 45
            +       FCS R +
Sbjct: 634 VIFKWQDMTFCSYRCL 649


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 64  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 162
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 85  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 228
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 158 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 12
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,689,294
Number of Sequences: 28952
Number of extensions: 160278
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)