Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40192
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    28   1.00 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.3  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   9.3  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.3  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +1

Query: 244 YETEMESALNHLDP*RKLIISMFSPSKVNMNTLRLTEPL*SSRIQLTRTDTNHRVSYFQL 423
           ++ ++E  L  +D  + L+ + F+  +  ++ LR    L   RIQ  R + + R   F+ 
Sbjct: 152 HQQQLEEVLATVDQLQSLVTN-FNDQQDEVDELRERITLKEERIQQMRNEASQRRFEFKT 210

Query: 424 LLQCLKPS 447
            ++CL+ S
Sbjct: 211 TIECLEES 218


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 365  LHRGSVRRRVFILTLDGENIDIINFLQG-SR*LSADSISVS 246
            L  G V+ + F+L +D E IDI+ +  G  R +S D + +S
Sbjct: 970  LRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISLDLLPLS 1010


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 333  EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 437
            +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955  DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 264  SAQSSGSLKKVDNIDVLAIQGQYEYS-APDGTPVKFTYTADENGYQPQSELLPVAPPMPE 440
            +A S+  +    +++V A+        A +G+ V  T   D N     S +  V+   P 
Sbjct: 1097 AAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAVSKTDDVD-NVVSGHSNVNGVSKSRPN 1155

Query: 441  AIRRAIDYILAHPPK 485
             + R+ DY+++H P+
Sbjct: 1156 IVERSEDYVISHLPE 1170


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
 Frame = +1

Query: 253 EMESALNHLDP*RKLIISMFSPSKV----NMNTLRLTEPL-*SSRIQLTRT-------DT 396
           ++  ALNH     K ++S ++PS V     +  L L + +  SS  +L R+       DT
Sbjct: 506 QLREALNHSSSVTKEVLSQYTPSVVIGVLKLYFLELPDSIVPSSAFELIRSIYMNHSNDT 565

Query: 397 NHRVSYFQ-LLLQCLKPSVALLTTFSLTHL 483
            +R+   Q LL Q  + ++A L+   +THL
Sbjct: 566 PYRLRLLQNLLSQLRRVNLATLSAI-ITHL 594


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 178 SEADAVILRSDTEVNPDGFSFGYETEMESALNHLD 282
           ++ + V L S T       S+GYE  +  + NH+D
Sbjct: 267 ADGNYVPLPSSTNTYGPSNSYGYEININESTNHVD 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,672
Number of Sequences: 5004
Number of extensions: 45123
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)