Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40192
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0137 - 21080263-21081894                                         32   0.34 
02_05_0617 + 30383334-30383579,30383592-30383681,30383772-303839...    29   2.4  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    28   7.2  
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474...    28   7.2  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    28   7.2  

>09_06_0137 - 21080263-21081894
          Length = 543

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 399 PQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*SRRFRAQRPPPKKSGLYFEHHTL 578
           P     P  PP+PE +  A+  +LA PP  +    L  R    +R  P    + F HH L
Sbjct: 77  PVPATAPSEPPLPE-LSSALSGLLASPPSPQLPLGLLRRLLALRRGVPLPEAVAFFHHVL 135


>02_05_0617 +
           30383334-30383579,30383592-30383681,30383772-30383901,
           30384578-30384591
          Length = 159

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 393 YQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*SRRFRAQRPPPKKS 551
           Y+P+    P APP    +  A  ++L  PP   + ++L +    A+ PP ++S
Sbjct: 29  YRPRRPAAPTAPPGSRGL--AAQWLLPPPPPRRSHRRLIAPAVPAEFPPSRRS 79


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 405 SELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*SRRFRAQRPPPKKSG 554
           S ++ +A P    +  A+D++   PP     K L  ++  A+ PPP  +G
Sbjct: 500 SPVVSMADPYARCL--AVDHLQPPPPMLAAAKNLQQQQNTAEAPPPPPAG 547


>12_02_0653 +
           21545862-21546584,21546661-21546696,21547182-21547401,
           21547590-21548025,21548103-21548273,21548354-21548636,
           21548716-21548829,21549012-21549082,21549417-21549429
          Length = 688

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 456 IDYILAHPPKTETVKKL*SRRFRAQRPPPKK 548
           + Y + HPP  E +    +RR +A  PPP K
Sbjct: 308 VGYTIPHPPNDEILTLGAARRQQAAPPPPAK 338


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +1

Query: 364 SSRIQLTRTDTNHRVSYFQLLLQCLKPSVALLTTFSLTH 480
           +S  Q ++++ +H  S  Q+  +C +PS+A +  +S+TH
Sbjct: 852 TSEFQQSKSNRDHHNSR-QVDRECTQPSIASMANYSVTH 889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,141
Number of Sequences: 37544
Number of extensions: 295958
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)