Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40192
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   28   7.4  
SB_31627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_1828| Best HMM Match : DUF938 (HMM E-Value=1.5)                     27   9.8  

>SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 393 YQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKK 503
           Y+ QS  LP  PP P A+   +D++ AH P + T+++
Sbjct: 54  YRHQSSSLPTLPP-PVALIN-LDFVAAHSPHSPTIRR 88


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 369 TYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*SRRFRAQ 530
           T+  D  G  PQ  L  V+P M   +R   D       +TE  +    RR RAQ
Sbjct: 466 THVGDSEGTSPQYTLTKVSPEMEALVRERNDLARELRQRTEAYEAE-LRRLRAQ 518


>SB_31627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 420 VAPPMPEAIRRAIDYILAHPPKTETVKKL*SRR 518
           V PP P A+ R + +    PP TE   K+ +RR
Sbjct: 56  VGPPTPSAVARYLPHPTPAPPYTEGELKVRTRR 88


>SB_1828| Best HMM Match : DUF938 (HMM E-Value=1.5)
          Length = 206

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 506 IIQKIQSTTTPAKEKWTLFRAPYVININNI 595
           +I+ I   T+ A  +   F APYV+N+N I
Sbjct: 72  VIRNIGMGTSTAAARLGSFSAPYVVNLNRI 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,340
Number of Sequences: 59808
Number of extensions: 329299
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)