Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40192
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    35   0.043
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    29   2.1  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   6.5  

>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 417 PVAPPMPEAIRRAIDYILAHPPKTETVKKL*SRRFRAQRPPPKKS 551
           P+ PP+PE I   +  +LA  P   +V K  +R+    + PP+ S
Sbjct: 57  PIPPPLPEPIPELVQILLAAEPNKPSVPKRSNRKKLTYKQPPRNS 101


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 282 SLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELL---PVAPPMPEAIRR 452
           +LKKVD+I+   +Q   E S+P+  P   T+    +  +P   +    P  PP  +AI  
Sbjct: 124 NLKKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRPSPPAPPPRVDAIEE 182

Query: 453 AI 458
           A+
Sbjct: 183 AV 184


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 484 RPKP*KSYNPEDSEHNDPRQRKVDFISSTIRYQYQ*H 594
           RP P  +  P  S H  P+      +SST  YQ + H
Sbjct: 865 RPSPNAAPTPSPSHHQKPKLSSPAMVSSTNEYQLRKH 901


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +3

Query: 414 LPVAPPMPEAIRRAIDYILAHPPKTETVKKL*SRRFRAQRPPPKKSGLYFEHHTLSISIT 593
           LP  PP  E I+R   Y+   P        L   R +   PPP  +    +  TL +S  
Sbjct: 165 LPSVPPSKERIKRIPSYLKPTPAPRSMSATLPRARLKTPPPPPPVTN---QFDTLPVSFR 221

Query: 594 S 596
           S
Sbjct: 222 S 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,288
Number of Sequences: 27780
Number of extensions: 254676
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)