Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40191
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   3.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   5.9  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 728 FKTRFALVIYFXLSKYNYSWLHKHFF 651
           F TRF  VIY  LSKY   W  + FF
Sbjct: 693 FFTRFFRVIYIVLSKYT-QWTTQKFF 717


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 298 QTEVRQRFETLFPVRL 251
           Q E+R RFE LFPV+L
Sbjct: 446 QKELRSRFEILFPVKL 461


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 606 FQETCNM*FDVPL--SLKKMFM*PRIIVF*KXEINYQSKPGFEMVNQW 743
           F   C   F +P   +L      P+I +F   E++Y    G+ +V+QW
Sbjct: 383 FYGLCKKFFSIPNGPALVDTIFQPQIDIFISQELHYFKTVGWSLVDQW 430


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 257 HRKQCFKALTNFCLTALKKGNFEKDLLIDVQDKLQEMISDSDELHS 394
           HRK  F A     LT   + + EK+ +  ++ +  EM+  SD++HS
Sbjct: 234 HRKCAFDAYILNYLT--DQSDAEKNRVTKIRKEFIEMLKSSDKIHS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,951
Number of Sequences: 5004
Number of extensions: 74259
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)