Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40191
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    30   2.0  
06_02_0105 - 11893666-11895483,11895661-11896422                       29   6.2  

>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 PHRKQCFKALTNFCLTALKKGNFEKDLLIDV 346
           PH K+CF    +FC    K   FEKD L+D+
Sbjct: 405 PHLKRCF----SFCAVYPKDYRFEKDTLVDI 431


>06_02_0105 - 11893666-11895483,11895661-11896422
          Length = 859

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = +2

Query: 149 KSSCGIPALGIRIALRLPLVELREIDSGLGQSAPQPHRKQCFKALTNFCLTALKKGNFEK 328
           +++  I A  +R+ ++L L EL  +       A +   +     L        K+ +  K
Sbjct: 559 EATSSIAAASLRVEIQLALRELEAVQ------AKEKESRNGMLGLQKIMEDTAKEADESK 612

Query: 329 DLLIDVQDKLQEMISDSDELHSCLKIVQ 412
            +  + Q+KL++   D D   SCL  ++
Sbjct: 613 SIAREAQEKLRKAKEDMDHAKSCLDTME 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,191,396
Number of Sequences: 37544
Number of extensions: 424099
Number of successful extensions: 905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)