Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40191
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.22 
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         29   6.3  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         29   6.3  
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  

>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 21  SYLKSNIFKSLPT-SRLTSKTDSPAYSRVSTHLAAFKKCVIDQGKVLVESQHWESVLHYV 197
           S L ++IF  +P  SR+T + +  +Y   S H  ++K   +  GK+   +  + +    +
Sbjct: 661 SKLLADIFIPVPELSRVTGRAEMESYEFSSNHTVSYKHEGVGSGKIYACASAYRASSAAI 720

Query: 198 FLSW 209
           FLSW
Sbjct: 721 FLSW 724


>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1910

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 81  DSPAYSRVSTH--LAAFKKC-VIDQGKVLVESQHWESVLHYVFLSWNYVKSTPVWDNQPH 251
           D P Y     H  L AF+ C V+    VL+E   W S   +V ++  Y + +P+   +P+
Sbjct: 741 DDPVYLCHGPHRQLEAFQLCNVLSNAPVLIEQLSWFSPTSFVEVAKLYQRLSPLVGLEPY 800

Query: 252 NL 257
            +
Sbjct: 801 QI 802


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 141 DQGKVLVESQHWESVLHYVFLSWNYVKSTPVWD 239
           D G + + S H+ + +   F+ WN  K  PVWD
Sbjct: 675 DNGMIQLASLHFHTNILEYFIEWNN-KDLPVWD 706


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 232 FGTISPTTSQETVFQSVDELLFDGFKERKLRERLADR 342
           +G ++  T  ET  + +   LF G+KER+L   L +R
Sbjct: 186 YGCVTELTGNETDEERLFRFLFQGYKERRLVTPLRNR 222


>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 254 PHRKQCFKALTNFCLTALKKGNFEKDL 334
           PH+  C +AL   C TALKK   E+ L
Sbjct: 487 PHQNGCAEALVKTCKTALKKAVGEQTL 513


>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +2

Query: 200 PLVELREIDSGLGQSA---PQ-PHRKQCFKALTNFCLT 301
           PL  LR++D  +  S    PQ PH++QC + L++ C T
Sbjct: 368 PLKRLRQMDWDVADSRAEMPQHPHKRQCTEVLSSKCST 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,982,521
Number of Sequences: 59808
Number of extensions: 506863
Number of successful extensions: 1058
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)