Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40191
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    28   9.7  

>Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical
           protein T07G12.11 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 311 KGNFEKDLLIDVQDKLQEMISDSDELHSCLK 403
           K N  K+  +++ +KL E++SD D+   CL+
Sbjct: 91  KYNSAKNFTLNLAEKLSEILSDDDKTDKCLE 121


>Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical
           protein T07G12.10 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 311 KGNFEKDLLIDVQDKLQEMISDSDELHSCLK 403
           K N  K+  +++ +KL E++SD D+   CL+
Sbjct: 92  KYNSAKNFTLNLAEKLSEILSDDDKTDKCLE 122


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 784 KFN*HGIYQPFNFHHWLTISKPGLLW*FISXFQNTIILGY 665
           K+  H +++  N  HW+    P LLW  ++  +N + LGY
Sbjct: 73  KYRVHNLFEAAN-DHWI----PQLLWFSLTVIKNAMFLGY 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,184,219
Number of Sequences: 27780
Number of extensions: 406580
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)