Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40191
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    27   0.29 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.2  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 248 PQPHRKQCFKALTNFCLTALKKGNFEKDLLI 340
           P  H  QC+       L   K GNF+ D+++
Sbjct: 60  PDDHDLQCYTTCIMKLLRTFKNGNFDFDMIV 90


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 236 GQSAPQPHRKQCFKALTNFCLTALKKGNFEKDLLIDVQDKLQEMISDSDELHSCLKIVQG 415
           G + PQP        L N  L  +KK  ++K     VQ     +I +  +L +C +   G
Sbjct: 188 GDNVPQPIESFEAAGLRNIVLDNIKKSGYKKP--TPVQKHALPIIMNGRDLMACAQTGSG 245

Query: 416 Q 418
           +
Sbjct: 246 K 246


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 329 DLLIDVQDKLQEMISDSDELHSCLKIVQGQL 421
           DLL +    ++ +++ SD L  C+K+   QL
Sbjct: 35  DLLSNYNKLVRPVVNTSDVLRVCIKLKLSQL 65


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 329 DLLIDVQDKLQEMISDSDELHSCLKIVQGQL 421
           DLL +    ++ +++ SD L  C+K+   QL
Sbjct: 35  DLLSNYNKLVRPVVNTSDVLRVCIKLKLSQL 65


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 763 YQPFNFHHWLTISKP 719
           ++PFNFH  +   KP
Sbjct: 497 HKPFNFHITINADKP 511


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 763 YQPFNFHHWLTISKP 719
           ++PFNFH  +   KP
Sbjct: 497 HKPFNFHITINADKP 511


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 124 NAAKCVDTLEYAGESVFDVR 65
           NA +C+  ++++   VFD R
Sbjct: 122 NATRCIGRIQWSKLQVFDCR 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,864
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)