Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40191
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide...    29   3.9  
At5g02920.1 68418.m00235 F-box family protein low similarity to ...    29   5.2  

>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
           identical to pseudo-response regulator 5 GI:10281006
           from [Arabidopsis thaliana]
          Length = 667

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 37  TSSKVCLHRASHQRLTPQRIPGCPHTWQHL--RNASLIREKFLWNPSIG 177
           T  K  L  A+   + P R     + WQH+  R  SL  + F WN S+G
Sbjct: 248 TVYKCMLKGAADYLVKPLRRNELRNLWQHVWRRQTSLAPDSFPWNESVG 296


>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 623 VTRLLKSNDFKSHSVIKITNTHLCTNYNY 537
           V+  L +    S++  KIT+ HLCT+Y+Y
Sbjct: 78  VSPKLINKTLASYTASKITSFHLCTSYSY 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,886,642
Number of Sequences: 28952
Number of extensions: 370269
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)