Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40190
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 169 3e-43
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 127 2e-30
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 83 5e-17
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 76 5e-15
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 39 0.001
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 37 0.003
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 36 0.007
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 36 0.009
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 35 0.012
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 33 0.050
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 33 0.066
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 31 0.15
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 0.62
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 29 0.82
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 1.4
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.9
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 27 2.5
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 27 2.5
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 3.3
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 3.3
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 4.4
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 5.8
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 26 5.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.8
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 26 7.6
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 26 7.6
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 26 7.6
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 169 bits (412), Expect = 3e-43
Identities = 77/87 (88%), Positives = 83/87 (95%)
Frame = +2
Query: 248 QKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 427
+ +SFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRD
Sbjct: 59 RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRD 118
Query: 428 AVLLIFANKQDLPNAMNAAEITDKLGL 508
A+LL+FANKQDLPNAMNAAEITDKLGL
Sbjct: 119 ALLLVFANKQDLPNAMNAAEITDKLGL 145
Score = 108 bits (259), Expect = 1e-24
Identities = 51/61 (83%), Positives = 56/61 (91%)
Frame = +3
Query: 75 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 254
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 255 L 257
+
Sbjct: 61 I 61
Score = 68.5 bits (160), Expect = 1e-12
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = +1
Query: 502 GSDSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 609
G SLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 144 GLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 127 bits (307), Expect = 2e-30
Identities = 57/87 (65%), Positives = 70/87 (80%)
Frame = +2
Query: 248 QKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 427
+ + F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD
Sbjct: 63 KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD 122
Query: 428 AVLLIFANKQDLPNAMNAAEITDKLGL 508
+LL+ ANKQDLP A++ A+ITD L L
Sbjct: 123 CLLLVLANKQDLPGALSPAQITDVLQL 149
Score = 89.8 bits (213), Expect = 4e-19
Identities = 42/57 (73%), Positives = 47/57 (82%)
Frame = +3
Query: 87 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNL 257
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKN+
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNI 65
Score = 46.8 bits (106), Expect = 4e-06
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 508 DSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 606
D L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 150 DKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 83.0 bits (196), Expect = 5e-17
Identities = 35/88 (39%), Positives = 59/88 (67%)
Frame = +2
Query: 245 IQKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELR 424
++ L FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L +L E++L
Sbjct: 57 VEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLL 116
Query: 425 DAVLLIFANKQDLPNAMNAAEITDKLGL 508
+L+ ANK D+ A+++ EI+ L +
Sbjct: 117 FTSILVLANKSDVSGALSSEEISKILNI 144
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +3
Query: 117 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNL 257
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + L
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGL 60
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 517 RNRNWYIQATCATSGDGLYEGLDWLSNQLK 606
++ +W I + A +G + + + WL+N LK
Sbjct: 148 KSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 76.2 bits (179), Expect = 5e-15
Identities = 39/99 (39%), Positives = 57/99 (57%)
Frame = +2
Query: 245 IQKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELR 424
I + FT +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+ +EL
Sbjct: 61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELA 120
Query: 425 DAVLLIFANKQDLPNAMNAAEITDKLGLIRCATVTGTSK 541
LI NK D P A++ E+ LGL + T G SK
Sbjct: 121 RVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKGVSK 158
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 120 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 221
K ++L +GLD AGKTT+L+ LK + PT+
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 266 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 445
+WD GQ++ R + Y++ G+I V D D++ ++ L + + L+
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLV 119
Query: 446 ANKQDL 463
NK D+
Sbjct: 120 GNKSDM 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +2
Query: 248 QKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 427
+++ +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTI 119
Query: 428 AVLLIFANKQDLPN 469
V+L +K DL N
Sbjct: 120 CVVLA-GSKSDLQN 132
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 245 IQKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDE 418
+ L ++DVGGQ R W + F+N +IF V ND ++ A E R++
Sbjct: 189 LDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESIS 248
Query: 419 LRDAVL 436
L D+++
Sbjct: 249 LFDSII 254
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +2
Query: 248 QKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 427
+K+ +WD GQ++ R + Y++ G + V D + L + L E +
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSN 115
Query: 428 AVLLIFANKQDL 463
V+++ NK DL
Sbjct: 116 IVIMLVGNKTDL 127
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 266 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 445
+WD GQ++ + L Y++N I V D + +A+ ++ L V+ +
Sbjct: 68 IWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALA 126
Query: 446 ANKQDLPNAMNAAEITD 496
NK DL A E D
Sbjct: 127 GNKLDLAQERRAVEKAD 143
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.012
Identities = 10/46 (21%), Positives = 24/46 (52%)
Frame = +2
Query: 248 QKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 385
+++ +WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 56 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 33.1 bits (72), Expect = 0.050
Identities = 23/93 (24%), Positives = 43/93 (46%)
Frame = +2
Query: 377 EAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLIRCATVTGTSKRHAPL 556
+ +E+L LSE +LRD+ + ++ P N+ +D LG I + A
Sbjct: 16 QCKEDLKVSLSESDLRDSQGQL--GIENPPKCNNSGNHSDNLGFIEQSETVHPENEKALT 73
Query: 557 PETDCTRVSTGSPISSRTPTANRMCANSQTNLI 655
P+ T++ T PI+ TP + + ++ L+
Sbjct: 74 PDLRDTKIHTSLPIT--TPFSKKRAREAKNILL 104
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 32.7 bits (71), Expect = 0.066
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Frame = +2
Query: 260 FTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDRERIGEAREELMRMLS 409
+ +DVGGQ R W H F+N L+F +V+ N ++ EA + +
Sbjct: 236 YRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLWDSICN 295
Query: 410 EDELRDAVLLIFANKQDL 463
++ +++F NK DL
Sbjct: 296 SSWFSESAMILFLNKLDL 313
Score = 29.5 bits (63), Expect = 0.62
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 114 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNLV-LLCGMLEAKT 290
G ++++L++G +GKTTI+ +++L + + ++N++ LC +LEA
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMD 130
Query: 291 KSD 299
S+
Sbjct: 131 NSN 133
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 266 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 445
+WD GQ++ R L Y +++ I V D + E+ + + + D ++++
Sbjct: 64 LWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLV 122
Query: 446 ANKQDL 463
NK DL
Sbjct: 123 GNKTDL 128
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 29.5 bits (63), Expect = 0.62
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Frame = +2
Query: 254 LSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELR 424
++ +WD GQ++ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 57 VTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECA 116
Query: 425 DAVLLIFANKQDLPNAMNAAEITDKLGLIRCATVTGTSKRHAPLPETDCTRVSTGSPISS 604
+++ N+ D + A + L C + G++ H + T V+ S
Sbjct: 117 FPFIIV-GNQIDKDASKRAVSLHRALDY--CKSKHGSNMIHFEASAKENTNVTDLFETVS 173
Query: 605 RTPTANRMCANSQTN 649
R N + N
Sbjct: 174 RLALENESSRDDFVN 188
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 29.1 bits (62), Expect = 0.82
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 254 LSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELR 424
++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 57 VTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPE 116
Query: 425 DAVLLIFANKQDL 463
++ NK D+
Sbjct: 117 TFPFILLGNKVDV 129
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 283 ASNIPHSKTKFLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFL 116
+S+ P+S+ + Y+ + L+ +VG+ + S + R LP N+LI L
Sbjct: 502 SSSSPYSRGPYKYNRIENLQMVVGVRASASGSFFAIRNDYLPPPIYKPSNMLIDLL 557
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 241 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 62
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 61 EYNF 50
+ F
Sbjct: 248 IHVF 251
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 251 KLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 364
++ F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 57 EICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/49 (20%), Positives = 26/49 (53%)
Frame = +2
Query: 242 RIQKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 388
R +++F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 55 RNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +2
Query: 506 LIRCATVTGTSKRHAPLPETDCTRVSTGSPISSRTPTANRMCANSQTNLIIERDYGFKIC 685
L R A+VT S+ ++ E T+ + ++++ CA+ T +E C
Sbjct: 645 LQRVASVTSPSRHNSDSKEKKQTKSPSLVKTLKEMHSSDQSCADCNTTARVEW------C 698
Query: 686 *LLFAIKYNVLCAGIHKCIY*RVIWCRSAPHSFPNPDAI 802
+ F + + C+GIH+ + + RS NP+ +
Sbjct: 699 AINFPVVLCIDCSGIHRSLGTHITKIRSLTLDKFNPETV 737
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 117 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 248
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 162 KTTILYKLKLGEIVTTIPTIGFNVETVEYKNLVLLCGMLEAKTK 293
KT L GEI + IG +VET E +NL+ L + TK
Sbjct: 1235 KTPDKLLLTTGEIYPSSHKIGSSVETFEIENLLHLSNYVVEMTK 1278
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 132 ILMVGLDAAGKTTILYKLKL 191
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 120 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 221
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +2
Query: 221 WL*CGDSRIQKLSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMR 400
+L CG+ + +S + G+ + R +W+++ + S ++ +I E + EL R
Sbjct: 286 FLDCGNYKPVNISVAPIEEQGEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQRELRR 345
Query: 401 MLSE 412
E
Sbjct: 346 QEEE 349
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 96 LFKGLFGKKEMRILMVGLDAAGKTTI 173
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 517 AANQTQFVCYLGCVHCVW 464
A N+T+ + Y G HC W
Sbjct: 290 AGNETRLIVYEGVPHCFW 307
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 687 NFYLLLNTMYYVRESINVFTDASSGAEARRIRFRTQ 794
+ Y ++ Y VRE IN+F D E +RFR++
Sbjct: 297 SMYGVVTLPYSVREGINIFLDGHIPTE--NLRFRSE 330
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 660 KETMGLRYVNFYLLLNTMYYV-RESINVF 743
K+ R++N+Y L+ T+YY ESI +
Sbjct: 103 KDLPWTRFINWYFLMTTLYYAYGESIYAY 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,620,488
Number of Sequences: 5004
Number of extensions: 78845
Number of successful extensions: 271
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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