Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40188
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...   113   2e-27
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.68 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.3  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    21   6.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score =  113 bits (271), Expect = 2e-27
 Identities = 53/56 (94%), Positives = 54/56 (96%)
 Frame = +2

Query: 14  LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 82  QHTSFN-SADGHGTNTTDFVYVLQ 14
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 169 FLESFVVHLHRFDFSSDVG 113
           FLE  + H  RF FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 127 SSDVGGGKDNNGTWFQHTSF 68
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 418  KSTEVNPKSIKSGDSAIVNLVPSKPLCVESSR 513
            ++TE +P +  +   +   +VP KP+   +SR
Sbjct: 2280 ENTECHPDASSTMAPSTTPMVPDKPVTTTTSR 2311



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 38   GIGTVPVGRVETGVLKPGTIVVFAPANITTEV 133
            G+G +P         KP   V  AP  +TT V
Sbjct: 990  GLGLIPDNPSREDCTKPPEPVTPAPPQVTTGV 1021


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 68  ETGVLKPGTIVVFAPANITTEVKS 139
           ETG ++PG I    P   T EV++
Sbjct: 96  ETGSIRPGVIGGSKPRVATPEVEN 119


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 496 CVESSRNSHPSVVLLSVT*GRQLLSS 573
           C++ +   +PSV  +S T G+ L+++
Sbjct: 51  CIKETLRLYPSVHFISRTLGQDLITT 76


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 461 QPLSTWYLPSLYV*SP-PGIPTPRSFCCP 544
           Q  ++W+ PS+Y  SP  G  +P     P
Sbjct: 183 QVAASWHTPSMYPLSPGAGFRSPYPSALP 211


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 461 QPLSTWYLPSLYV*SP-PGIPTPRSFCCP 544
           Q  ++W+ PS+Y  SP  G  +P     P
Sbjct: 75  QVAASWHTPSMYPLSPGAGFRSPYPSALP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,572
Number of Sequences: 336
Number of extensions: 3839
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)