Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40188
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 154 1e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 60 2e-10
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 48 1e-06
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.2
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 2.9
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 2.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.1
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 6.7
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 6.7
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 25 8.9
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 154 bits (373), Expect = 1e-38
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +2
Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181
LRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PG
Sbjct: 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPG 303
Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256
DNVGFNVKNVSVK++RRG V GDSK
Sbjct: 304 DNVGFNVKNVSVKDIRRGNVCGDSK 328
Score = 142 bits (344), Expect = 4e-35
Identities = 62/95 (65%), Positives = 76/95 (80%)
Frame = +1
Query: 241 CW*LQNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 420
C +N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGK 383
Query: 421 STEVNPKSIKSGDSAIVNLVPSKPLCVESSRNSHP 525
E +PK +KSGD+ I +VPSKP+CVE+ + P
Sbjct: 384 KIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418
Score = 42.3 bits (95), Expect = 5e-05
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 495 MC-RVLQEFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620
MC ++ PLGRFAVRDMRQTVAV + G AKVT
Sbjct: 408 MCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 154 bits (373), Expect = 1e-38
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +2
Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181
LRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PG
Sbjct: 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPG 303
Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256
DNVGFNVKNVSVK++RRG V GDSK
Sbjct: 304 DNVGFNVKNVSVKDIRRGNVCGDSK 328
Score = 142 bits (344), Expect = 4e-35
Identities = 62/95 (65%), Positives = 76/95 (80%)
Frame = +1
Query: 241 CW*LQNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 420
C +N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGK 383
Query: 421 STEVNPKSIKSGDSAIVNLVPSKPLCVESSRNSHP 525
E +PK +KSGD+ I +VPSKP+CVE+ + P
Sbjct: 384 KIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418
Score = 42.3 bits (95), Expect = 5e-05
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 495 MC-RVLQEFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620
MC ++ PLGRFAVRDMRQTVAV + G AKVT
Sbjct: 408 MCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 154 bits (373), Expect = 1e-38
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +2
Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181
LRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PG
Sbjct: 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPG 303
Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256
DNVGFNVKNVSVK++RRG V GDSK
Sbjct: 304 DNVGFNVKNVSVKDIRRGNVCGDSK 328
Score = 142 bits (344), Expect = 4e-35
Identities = 62/95 (65%), Positives = 76/95 (80%)
Frame = +1
Query: 241 CW*LQNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGK 420
C +N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGK 383
Query: 421 STEVNPKSIKSGDSAIVNLVPSKPLCVESSRNSHP 525
E +PK +KSGD+ I +VPSKP+CVE+ + P
Sbjct: 384 KIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418
Score = 42.3 bits (95), Expect = 5e-05
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 495 MC-RVLQEFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620
MC ++ PLGRFAVRDMRQTVAV + G AKVT
Sbjct: 408 MCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIV--VFAPANITTEVKSVEMHHEALQEAVPG 181
+ ++DV+ I G GTV GRVE G LK G + V +++ T V +EM + L AV G
Sbjct: 255 MAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAG 314
Query: 182 DNVGFNVKNVSVKELRRGYVAGDSKT 259
DN G ++++ ++L+RG + T
Sbjct: 315 DNCGLLLRSIKREQLKRGMIVAQPGT 340
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 259 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 438
NP F AQ+ +L P ++ GY+ V+ HTA FA++ K+D +T + ++ P
Sbjct: 552 NPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPP 610
Query: 439 KSIKSGDSAIVNLVPSKPLCVE 504
G I L P+C+E
Sbjct: 611 MFATKGMKIIAELETQTPVCME 632
Score = 42.3 bits (95), Expect = 5e-05
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Frame = +2
Query: 8 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV-EMHHEALQEAVPGD 184
+P+ YK +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD
Sbjct: 471 MPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGD 528
Query: 185 NVGFNVKNVSVKELRRGYVAGDSK------TTHLRVLQILQLKSLCLT 310
V V+ +++ GYV +K T + + IL+L S+ T
Sbjct: 529 QVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTT 575
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 132 TSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSC 16
+SVV+ + +T V + + VST TGTV +P +C
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 226 QFLDGHVLYVETYIVSRYSFLESFV 152
+F DGH+L ETY+ LES V
Sbjct: 527 KFFDGHLLASETYVGGHVESLESGV 551
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 545 TDSKTTEGWE-FLEDSTHRGLEGTKLTMAESPD 450
+D K+ E E FLE+S EG + M E PD
Sbjct: 547 SDQKSIESIEEFLEESVKDSCEGLMVKMLEGPD 579
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 250 VTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRF 134
+T ++ + L H+ +++ SR +FL ++H+H F
Sbjct: 1012 LTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHLILHMHGF 1050
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 394 EKVDRRTGKSTEVNPKSIKSGDSAIVNLVPSKPLCVESSRNSHPSV 531
EKV+ + + + +S+K D I N S + +E+ +N+ P +
Sbjct: 36 EKVEAKALSRSRLKNQSVKKTDLRITNDYSSLFVSIENKKNTIPDI 81
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 81 NTPVSTLPTGTVPIPPIL 28
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -1
Query: 168 SWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT 55
SW SW +ST L +V + G T ST T
Sbjct: 97 SWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRT 134
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 391 KEKVDRRTGKSTEVNPKSIKSGDSAIVNL 477
+EKV +RT S +N + ++ D ++NL
Sbjct: 39 EEKVTQRTASSDSLNTIASENNDENVINL 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,191
Number of Sequences: 5004
Number of extensions: 61030
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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