Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40188
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 159 2e-39
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 33 0.14
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 31 1.0
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 30 1.3
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 3.1
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 28 5.4
SB_22891| Best HMM Match : Ank (HMM E-Value=0) 28 5.4
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32) 28 7.1
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 28 7.1
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 159 bits (385), Expect = 2e-39
Identities = 73/85 (85%), Positives = 81/85 (95%)
Frame = +2
Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181
LRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVEMHHE+L EA+PG
Sbjct: 105 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPG 164
Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256
DNVGFNVKNVSVK+++RG VAGD K
Sbjct: 165 DNVGFNVKNVSVKDIKRGNVAGDFK 189
Score = 136 bits (329), Expect = 1e-32
Identities = 57/85 (67%), Positives = 72/85 (84%)
Frame = +1
Query: 253 QNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 432
+NNPPK FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E
Sbjct: 189 KNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLED 248
Query: 433 NPKSIKSGDSAIVNLVPSKPLCVES 507
NPK IK+GD+A+V ++PSKP+CVE+
Sbjct: 249 NPKMIKTGDAAMVEMIPSKPMCVET 273
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/26 (76%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 495 MC-RVLQEFPPLGRFAVRDMRQTVAV 569
MC EFPPLGRFAVRDM+QTVAV
Sbjct: 269 MCVETFTEFPPLGRFAVRDMKQTVAV 294
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -3
Query: 253 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHT 74
G T TTT V T ++SRYS++E + H + + S + TW Q
Sbjct: 86 GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLK 145
Query: 73 SFNSADGHGTNTTDFVY 23
F++ H +N + Y
Sbjct: 146 KFHATHYHPSNARFYTY 162
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 364 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDSAIVNLVPSKP 492
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 400 VDRRTGKSTEVNPKSIKSGDSAIVNLVPSKPLCVE 504
+D++TGK + P+ IK AI L +C+E
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIE 530
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 26 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 184
+ I G GT+ G + +G + V +T +VKS++M + + +A GD
Sbjct: 120 FSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 452 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 348
DL +F G+T++ LP ST + NLQ W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 234 PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLP 58
P +T + TLSPGT + + S +A +TT+ P T PV+TLP
Sbjct: 17 PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76
Query: 57 TGTVPIP 37
+ P
Sbjct: 77 PDSTMAP 83
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 325 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDSAIVNLV-PSKP 492
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 14 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEALQEAVPG 181
+ D Y + G+GTV G G+++ ++ P + ++S+ ++E G
Sbjct: 109 IDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMPVKEVRGG 168
Query: 182 DNVGFNVK 205
F++K
Sbjct: 169 QTASFSLK 176
>SB_22891| Best HMM Match : Ank (HMM E-Value=0)
Length = 429
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -2
Query: 548 VTDSKTTEGWEFLEDSTHRGLEG-TKL---TMAESPDLMDFGLTSVDLPVRRSTFSLISA 381
+ D+++ +GW L ++H G E KL + A+ L D G T++ L + R S I
Sbjct: 39 LVDARSEDGWTPLHVASHYGRESFVKLLIESKAQVDALSDKGTTALQLAIIRERTSCIKV 98
Query: 380 NLQA 369
L++
Sbjct: 99 LLES 102
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -2
Query: 548 VTDSKTTEGWEFLEDSTHRGLEG-TKL---TMAESPDLMDFGLTSVDLPVRRSTFSLISA 381
+ D+++ +GW L ++H G E KL + A+ L D G T++ L + R S I
Sbjct: 215 LVDARSEDGWTPLHVASHYGRESFVKLLIESKAQVDALSDKGTTALQLAIIRERTSCIKV 274
Query: 380 NLQA 369
L++
Sbjct: 275 LLES 278
>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
Length = 991
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 402 NFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVLESPA 241
+++ D+C F G V + ++W V ++ HN + K+ S + V+ A
Sbjct: 148 DYYLDYCYFMGEVSTTNDEFWSAEV-----LINHNPCTLKLDSGSKVTVVGDKA 196
>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 98 VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYV 241
VVF P NI+ + ++ A ++ +P + +KN + R GYV
Sbjct: 14 VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYV 62
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 144 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 19
+TD+TS+ M+ TT + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,016,400
Number of Sequences: 59808
Number of extensions: 508612
Number of successful extensions: 1717
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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