BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40188 (624 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 96 2e-20 At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 58 6e-09 At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 53 1e-07 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 45 4e-05 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 42 3e-04 At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 3.3 At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 29 3.3 At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 3.3 At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 4.4 At5g13580.1 68418.m01570 ABC transporter family protein 27 7.7 At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 7.7 At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 27 7.7 At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 7.7 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 153 bits (370), Expect = 1e-37 Identities = 69/85 (81%), Positives = 79/85 (92%) Frame = +2 Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181 LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PG Sbjct: 234 LRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPG 293 Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256 DNVGFNVKNV+VK+L+RGYVA +SK Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSK 318 Score = 124 bits (298), Expect = 6e-29 Identities = 51/85 (60%), Positives = 70/85 (82%) Frame = +1 Query: 253 QNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 432 +++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E Sbjct: 318 KDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEK 377 Query: 433 NPKSIKSGDSAIVNLVPSKPLCVES 507 PK +K+GD+ +V + P+KP+ VE+ Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVET 402 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/36 (61%), Positives = 25/36 (69%) Frame = +3 Query: 513 EFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620 E+PPLGRFAVRDMRQTVAV + + AKVT Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 153 bits (370), Expect = 1e-37 Identities = 69/85 (81%), Positives = 79/85 (92%) Frame = +2 Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181 LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PG Sbjct: 234 LRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPG 293 Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256 DNVGFNVKNV+VK+L+RGYVA +SK Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSK 318 Score = 124 bits (298), Expect = 6e-29 Identities = 51/85 (60%), Positives = 70/85 (82%) Frame = +1 Query: 253 QNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 432 +++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E Sbjct: 318 KDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEK 377 Query: 433 NPKSIKSGDSAIVNLVPSKPLCVES 507 PK +K+GD+ +V + P+KP+ VE+ Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVET 402 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/36 (61%), Positives = 25/36 (69%) Frame = +3 Query: 513 EFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620 E+PPLGRFAVRDMRQTVAV + + AKVT Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 153 bits (370), Expect = 1e-37 Identities = 69/85 (81%), Positives = 79/85 (92%) Frame = +2 Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181 LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PG Sbjct: 234 LRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPG 293 Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256 DNVGFNVKNV+VK+L+RGYVA +SK Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSK 318 Score = 124 bits (298), Expect = 6e-29 Identities = 51/85 (60%), Positives = 70/85 (82%) Frame = +1 Query: 253 QNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 432 +++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E Sbjct: 318 KDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEK 377 Query: 433 NPKSIKSGDSAIVNLVPSKPLCVES 507 PK +K+GD+ +V + P+KP+ VE+ Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVET 402 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/36 (61%), Positives = 25/36 (69%) Frame = +3 Query: 513 EFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620 E+PPLGRFAVRDMRQTVAV + + AKVT Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 153 bits (370), Expect = 1e-37 Identities = 69/85 (81%), Positives = 79/85 (92%) Frame = +2 Query: 2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 181 LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEVKSVEMHHE+L EA+PG Sbjct: 234 LRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPG 293 Query: 182 DNVGFNVKNVSVKELRRGYVAGDSK 256 DNVGFNVKNV+VK+L+RGYVA +SK Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSK 318 Score = 124 bits (298), Expect = 6e-29 Identities = 51/85 (60%), Positives = 70/85 (82%) Frame = +1 Query: 253 QNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 432 +++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E Sbjct: 318 KDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEK 377 Query: 433 NPKSIKSGDSAIVNLVPSKPLCVES 507 PK +K+GD+ +V + P+KP+ VE+ Sbjct: 378 EPKFLKNGDAGMVKMTPTKPMVVET 402 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/36 (61%), Positives = 25/36 (69%) Frame = +3 Query: 513 EFPPLGRFAVRDMRQTVAVESSRLSTSRRVGVAKVT 620 E+PPLGRFAVRDMRQTVAV + + AKVT Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVT 440 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 95.9 bits (228), Expect = 2e-20 Identities = 40/68 (58%), Positives = 53/68 (77%) Frame = +1 Query: 304 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDSAIVNLVP 483 +NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ ++AI+N+ P Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60 Query: 484 SKPLCVES 507 +KP+ VE+ Sbjct: 61 TKPMVVEA 68 Score = 37.9 bits (84), Expect = 0.005 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = +3 Query: 516 FPPLGRFAVRDMRQTVAV 569 +PPLGRFA+RDMRQTV V Sbjct: 72 YPPLGRFAIRDMRQTVGV 89 >At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) identical to SWISS-PROT:P17745 elongation factor Tu, chloroplast precursor (EF-Tu) [Arabidopsis thaliana] Length = 476 Score = 57.6 bits (133), Expect = 6e-09 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Frame = +2 Query: 8 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE--VKSVEMHHEALQEAVPG 181 L ++DV+ I G GTV GRVE G +K G V T V VEM + L EA+ G Sbjct: 290 LAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAG 349 Query: 182 DNVGFNVKNVSVKELRRGYV 241 DNVG ++ + +++RG V Sbjct: 350 DNVGLLLRGIQKADIQRGMV 369 >At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu, putative similar to mitochondrial elongation factor Tu [Arabidopsis thaliana] gi|1149571|emb|CAA61511 Length = 454 Score = 53.2 bits (122), Expect = 1e-07 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Frame = +2 Query: 8 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF-----APANITTEVKSVEMHHEALQEA 172 +P++DV+ I G GTV GR+E GV+K G V + + V VEM + L Sbjct: 270 MPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNG 329 Query: 173 VPGDNVGFNVKNVSVKELRRGYV 241 GDNVG ++ + ++++RG V Sbjct: 330 QAGDNVGLLLRGLKREDIQRGMV 352 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 45.2 bits (102), Expect = 4e-05 Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 6/102 (5%) Frame = +2 Query: 5 RLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 184 R+P+ D +K +GTV +G+VE+G ++ G +V P +V ++ + ++ A PG+ Sbjct: 332 RMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGE 389 Query: 185 NVGFNVKNVSVKELRRGYVAGD------SKTTHLRVLQILQL 292 N+ + + +++ G+V + T + LQIL+L Sbjct: 390 NLRVRITGIEDEDILSGFVLSSIVNPVPAVTEFVAQLQILEL 431 Score = 41.1 bits (92), Expect = 6e-04 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Frame = +1 Query: 259 NPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 432 NP +F AQ+ +L + GY +L H C+ E+K ++D +T K + Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKK 473 Query: 433 NPKSIKSGDSAIVNLVPSKPLCVE 504 +K+G + + + + +C+E Sbjct: 474 KVLFVKNGAAVVCRIQVTNSICIE 497 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 42.3 bits (95), Expect = 3e-04 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Frame = +2 Query: 2 LRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVP 178 L +P+ D + G V G++E G ++PG+ V+ P+ ++S+E +A A Sbjct: 468 LLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARA 527 Query: 179 GDNVGFNVKNVSVKELRRGYVAGD-----SKTTHLRVLQILQLKSLCLTILVKSQTVTH 340 GDNV ++ + ++ G V S THL L +L L+ IL+ SQ H Sbjct: 528 GDNVALALQGIDANQVMAGDVLCHPDFPVSVATHLE-LMVLVLEG-ATPILLGSQLEFH 584 Score = 35.5 bits (78), Expect = 0.029 Identities = 22/86 (25%), Positives = 38/86 (44%) Frame = +1 Query: 262 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 441 P A V+VL I G H A A ++ +D +TG+ T+ +P+ Sbjct: 555 PVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPR 614 Query: 442 SIKSGDSAIVNLVPSKPLCVESSRNS 519 + + SA++ + P+CVE+ S Sbjct: 615 CLTAKQSAMLEVSLQNPVCVETFSES 640 >At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA10) identical to SP|Q9SZR1 Potential calcium-transporting ATPase 10, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana}; similar to SP|Q9LF79 Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8) {Arabidopsis thaliana} Length = 1069 Score = 28.7 bits (61), Expect = 3.3 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -1 Query: 177 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 76 G + WR W S DLT ++++ A ++ G T Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211 >At3g44350.1 68416.m04765 no apical meristem (NAM) family protein Tobacco elicitor-responsive gene (TERN), NAC-domain protein, Nicotiana tabacum, EMBL:AB021178 Length = 228 Score = 28.7 bits (61), Expect = 3.3 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 542 DSKTTEGWEFLEDSTHRGLE-GTKLTMAESPDLMDFGLTSVDLPVRRSTFS 393 D + TE + + G+E ++ T++ SP+ G VDLPV +T + Sbjct: 155 DRRPTEAYAIERNLPSNGVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205 >At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain Length = 700 Score = 28.7 bits (61), Expect = 3.3 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = -1 Query: 198 LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTP 73 L+P+LS + C+S LT V ML+ A+TT++P + P Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKP 468 >At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 536 Score = 28.3 bits (60), Expect = 4.4 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 376 KFAEIKEKVDRRTGKSTEVNPKSI 447 +F + KEK+DR GK E+N K + Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281 >At5g13580.1 68418.m01570 ABC transporter family protein Length = 727 Score = 27.5 bits (58), Expect = 7.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 147 ISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVP 43 IS ++ +++GA TT ++PVST+PT P Sbjct: 384 ISASISKGKLVSGATTTTHSSGSSPVSTIPTFANP 418 >At4g01910.1 68417.m00251 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 651 Score = 27.5 bits (58), Expect = 7.7 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +1 Query: 76 CVETRYHCCLCPRQHHY*SQIC 141 C R+HC LC R+ +Y S C Sbjct: 73 CSNLRFHCDLCGRRTNYLSYYC 94 >At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein similar to SP|Q01780 Polymyositis/scleroderma autoantigen 2 {Homo sapiens}; contains Pfam profiles PF00570: HRDC domain, PF01612: 3'-5' exonuclease Length = 738 Score = 27.5 bits (58), Expect = 7.7 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +1 Query: 388 IKEKVDR-RTGKSTEVNPKSIKSGDSAIVNLVPSKPLCVESSRNSHPSV-VLLS 543 +K K++ +T + PK K+G A + + SK +CV+ S+ VLLS Sbjct: 573 LKRKLESDKTVVEKNIEPKIEKTGTEASASSLSSKKVCVDDSKKQSSGFGVLLS 626 >At1g35610.1 68414.m04421 DC1 domain-containing protein contains Pfam protein PF03107 DC1 domain Length = 612 Score = 27.5 bits (58), Expect = 7.7 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = -2 Query: 92 YLVSTHQFQLCRRARYQYHRFCIRLA 15 Y + +HQF C++ Y H C L+ Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,166,517 Number of Sequences: 28952 Number of extensions: 342936 Number of successful extensions: 1038 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1035 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1265787216 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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