Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40187
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   0.60 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.8  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    28   1.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.2  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    27   4.2  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.6  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   7.4  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   7.4  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   9.7  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 101 AMPMDTAFVVTKPALNTLSSQRKNVRRRRCGKMNATRVGALRMVNP 238
           A P DT  + TKP  NTL S  K+        +N T    +R + P
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIRCIKP 667



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 352 AMPMDTPFVVTKLVLNTLTSQKKTVRRILHGKMNATRVGALRTVNP 489
           A P DT  + TK   NTL S  K+    L   +N T    +R + P
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIRCIKP 667


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 546 KAEIALRDRRGRTSVTVVGAMPMDTPFVVT 635
           K EI    + GRT++T + + P+DTP  VT
Sbjct: 631 KLEIYHDTKAGRTTITNITSEPLDTPEQVT 660



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 325 GRTSVTVVGAMPMDTPFVVTKLV 393
           GRT++T + + P+DTP  VT L+
Sbjct: 641 GRTTITNITSEPLDTPEQVTWLL 663


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 580 RPRRSRSAISALDQLRLLGSVISDHSTLVHMGLPSEVHQHVLHSFF 443
           +P+ +++A  A++    L SVIS+ S ++   LP++V +  +   F
Sbjct: 30  KPKPTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKELF 75



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 329 RPR*SRSAFSALDQLRLLGSVISDASILVHMGLPSEVHQHVLHSFF 192
           +P+ +++A  A++    L SVIS+ S ++   LP++V +  +   F
Sbjct: 30  KPKPTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKELF 75


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 151 CVQCRLRHYKCRIHRHCTYNCYTGSTTTI 65
           C+ CR R  KC  +R C +NC+      I
Sbjct: 26  CLYCRRRKIKCDKNRPC-HNCFVAKRECI 53


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 305 FSALDQLRLLGSVISDASILVHMGLPSE 222
           FS    L  LGS+ISD+ ++VH GL S+
Sbjct: 306 FSETFSLLPLGSLISDSYLVVHGGLFSD 333


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 178 PKTMWKNECNTCWCTSDGKPMCTRMDASLITLPRS 282
           PK  W    +  W T+ G   CT  +  L+ L  S
Sbjct: 95  PKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSS 129



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 429 PNTTWKNECNTCWCTSDGKPMCTRVE*SLITLPRS 533
           P   W    +  W T+ G   CT  E  L+ L  S
Sbjct: 95  PKLNWSTPKDALWITTTGSLKCTTAEEVLLLLKSS 129


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 266 ISDASILVHMGLPSEVHQHVLHSFFHIVFGAHSF 165
           +S  ++L+H  LP  ++ H LH F H     + +
Sbjct: 42  LSFFALLLH--LPCSIYSHTLHFFHHFTIACYHY 73



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 164 FGSIMCSVQASSLQMPYPSALHLQLLHWFDH 72
           F SI+C +   +L +  P +++   LH+F H
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTLHFFHH 65


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 113  PSALHLQLLHWFDHDDPGAHSLPWISSNFL 24
            P + HL LL+ + H     +S  W S +FL
Sbjct: 964  PESDHLMLLNIYQHWQRNGYSNSWCSKHFL 993



 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 364  PSALHLQLLHWFDHVDPGAHSLPWISSDFL 275
            P + HL LL+ + H     +S  W S  FL
Sbjct: 964  PESDHLMLLNIYQHWQRNGYSNSWCSKHFL 993


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 151 CVQCRLRHYKCRIHRHCTYNC 89
           C+ CR R  KC   +   YNC
Sbjct: 46  CLTCRKRRIKCDERKPICYNC 66


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 596 NCYTGSTTSIPERNLCLGSA 537
           N + GSTT +P+ N  +GSA
Sbjct: 256 NFHGGSTTFVPQGNFVIGSA 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,898,973
Number of Sequences: 5004
Number of extensions: 90644
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)