Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40187
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 38 0.013
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 33 0.27
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 3.3
04_04_1508 - 34072409-34072760,34073044-34073201 29 3.3
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 29 3.3
06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503 29 4.4
06_03_0919 - 25939176-25940441 28 7.7
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 28 7.7
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 28 7.7
01_06_0937 + 33175966-33178020 28 7.7
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 37.5 bits (83), Expect = 0.013
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = -1
Query: 495 CTWVYR-PKCTNTCCIHFSM*Y-SAHSLFLAR*C---VQHKLRHYK 373
CT + R P+C N+C + FS+ + HS+ L R C + H LR+YK
Sbjct: 20 CTTLARLPRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYYK 65
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -3
Query: 226 PKCTNTCCIHFSTS-SSAHILSLAR*CVQC---RLRHYK 122
P+C N+C + FS S H + L R C LR+YK
Sbjct: 27 PRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYYK 65
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 396 EHINEPKKDCAPNTTWKNECNTCWCTSDGKPMCTRV 503
EHI K C P+TT +N N+C T + C ++
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDKCCKI 56
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 145 EHIIEPKKECAPKTMWKNECNTCWCTSDGKPMCTRMDASLI 267
EHI K C P T +N N+C T + C ++ I
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDKCCKISGCKI 61
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 384 EACAEHINEPK-KDCAPNTTWKNECNTCWCTSDGKPMCT 497
E C H PK KDCAP T N C TS GK +C+
Sbjct: 990 EDCGHH---PKPKDCAPPPTDCISRNCCSNTSKGKDICS 1025
>04_04_1508 - 34072409-34072760,34073044-34073201
Length = 169
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 787 QFPKLLIMSTPILVHMGLPSEVHQHVLHSFFHIVFGGTVFLRLVNVFS 644
+FP L++ PI+V + +E+ LH +FH V GT +VNV S
Sbjct: 5 RFPLLVLCLLPIIVCSVVDAELTH--LHFYFHEVDAGTPNATVVNVAS 50
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 511 DHSTLVHMGLPSE-VHQHVLHSFFHVVFGAQSFFGSLMCSAQ 389
DH + ++G PSE V Q V+HS + + FG F S +A+
Sbjct: 217 DHEEMYYVGAPSESVEQDVMHS-YGMAFGGGGFAVSYPAAAE 257
>06_03_0230 - 18485721-18485821,18485908-18485976,18490113-18490503
Length = 186
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Frame = +3
Query: 291 IQGRECAPGSTWSNQCNSCRCNADGYAICSDEACAEHIN---EPKKD---------CAPN 434
++ + C P ++ N NSCR C+ + +H + +P D C P+
Sbjct: 25 VEAKSCCPSTSARNVYNSCRFAGGSREACAKLSTCKHFDGSCQPPYDHLTLNYDGGCCPS 84
Query: 435 TTWKNECNTCWCTSDGKPMCTRV 503
+T +N +C C R+
Sbjct: 85 STARNIYTSCRFVGGSYDSCARL 107
>06_03_0919 - 25939176-25940441
Length = 421
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = -2
Query: 131 SLQMPYPSALHLQL-LHWFDHDDPGAH-----SLPWISSNFLGV 18
SL++P P+ LQL L+W+ PG H SL W++ N L V
Sbjct: 169 SLELP-PATAELQLRLYWYAVRPPGLHGPGVASLRWLARNGLAV 211
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 675 VPPKTMWKNECNTCWCTSDGKPMCTKMG 758
+PPK W C TC S GKP+ K G
Sbjct: 340 LPPKAEWY--CPTCVARSKGKPLPPKYG 365
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 GSTWSNQCNSCRCNADGYAICS-DEACAEHINEPKKDCAPNTTWKNECNTCWC 470
G W Q N C C +C D AC E+ +K C + + KN C C
Sbjct: 444 GKQWYTQYNPCGCQQ----MCGKDCACVENGTCCEKYCGCSKSCKNRFRGCHC 492
>01_06_0937 + 33175966-33178020
Length = 684
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 255 CITNNTPKKSELIQGRECAPGSTWSNQCNSCRCNADGYAICSDEACAEHINEP-KKDCAP 431
C+ EL C P + + CNA+ +A AE + E +KDCAP
Sbjct: 436 CVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERL-----DAAAELLAEMLQKDCAP 490
Query: 432 NTTWKNECNTCWC 470
N N + +C
Sbjct: 491 NVVTFNVLVSFFC 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,546,212
Number of Sequences: 37544
Number of extensions: 642129
Number of successful extensions: 2068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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