Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40187
(816 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 32 0.64
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_37317| Best HMM Match : EGF_CA (HMM E-Value=6.6e-25) 31 1.1
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 31 1.1
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 27 1.4
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 30 2.0
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 30 2.0
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 30 2.6
SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25) 30 2.6
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58034| Best HMM Match : VWA (HMM E-Value=0) 29 3.4
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 29 3.4
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25) 29 4.5
SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) 29 6.0
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 29 6.0
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 29 6.0
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27) 28 7.9
SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25) 28 7.9
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 7.9
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 28 7.9
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 7.9
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 31.9 bits (69), Expect = 0.64
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -2
Query: 296 LDQLRLLG--SVISDASILVHMGLPSEVHQHVLHSFFHIVF-GAHSFFGSIMCSVQASSL 126
+ +L++ G VISD I V + +E VL +F H V AH F +M + +L
Sbjct: 403 VSKLKVTGPSDVISDY-ISVRDSIKAEQELEVLDNFHHFVSTNAHLFVAKMMPDIVQLAL 461
Query: 125 QMPYPSALHLQLL 87
Q P S +H Q +
Sbjct: 462 QQPSLSQVHTQAM 474
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 557 CAP-GSTWSNQCNS--CRCNADGYAICSDEACAEHIDE 661
CAP GS+ +N S C CNA GYA E C E IDE
Sbjct: 604 CAPIGSSCTNNAGSYTCSCNA-GYA-GDGETCVEDIDE 639
>SB_37317| Best HMM Match : EGF_CA (HMM E-Value=6.6e-25)
Length = 86
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 557 CAP-GSTWSNQCNS--CRCNADGYAICSDEACAEHIDE 661
CAP GS+ +N S C CNA GYA E C E IDE
Sbjct: 12 CAPIGSSCTNNAGSFTCSCNA-GYA-GDGETCVEDIDE 47
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Frame = +3
Query: 312 PGSTWSNQCNSCRCNADGYAICSDEACAEHINEPKKDC--APNTTWKNE----CNTCWCT 473
PG++ C CN GY + D+ + P C PN T+ ++ C C +
Sbjct: 69 PGASCDEPTGVCSCNQTGYLLDQDQKTCKWTGCPSNPCRICPNNTYSDQFMPVCQQCSSS 128
Query: 474 SDG 482
G
Sbjct: 129 CTG 131
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 27.5 bits (58), Expect(2) = 1.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 202 CNTCWCTSDGKPMCTRMDASLITLPRSLS*SKAENALRDQRGRTSVTVVGAMPMDTPF 375
CN+C CT D P T AS + + ++ +R++ GRT + M T F
Sbjct: 413 CNSCGCTIDPPPRVTHSMASSV-----IGMLVEKDTIRERMGRTDSATWLPVSMPTSF 465
Score = 21.8 bits (44), Expect(2) = 1.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 58 APGSSWSNQCNSCRCNAD 111
A +S CNSC C D
Sbjct: 404 ASNKPFSRFCNSCGCTID 421
>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 680
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 200 SFFHIVFGAHSFFGSIMCSVQASSLQMPYPSALHLQLLHWFD-HDDPGAHSLPWISSNFL 24
SF H+ F HS S M V S L++ H LHW D H G++ N
Sbjct: 235 SFMHLAFLHHSMLSSDMTMVLPSHLEV--TQGCHHTTLHWDDTHGVTGSYKKVHPQQNLQ 292
Query: 23 GVD 15
G++
Sbjct: 293 GMN 295
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -2
Query: 491 HGFTVRSAPTRVAFIFPCSIRRTVFFWL------VNVFSTSFVTTNGVSIGIAPT 345
H + S+ + F+FPCS R FWL +N+ S+ +G IG+ PT
Sbjct: 152 HSGMIVSSSSNHEFVFPCSPLRIRCFWLRKLVKQINLLELSYTGRDG--IGVLPT 204
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 432 NTTWKNECNTCWCTSDGKPMCTRV 503
NTT K +CNTC C G CT+V
Sbjct: 1194 NTTVKEDCNTCSCV-HGTRTCTKV 1216
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 253 PS*CTWVYHPKCTNTCCIHFSTSSS 179
PS C W P CT+ CC S++
Sbjct: 961 PSSCAWTCAPDCTSECCARHKVSAA 985
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 756 PS*CTWVYRPKCTNTCC 706
PS C W P CT+ CC
Sbjct: 961 PSSCAWTCAPDCTSECC 977
>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.9 bits (64), Expect = 2.6
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Frame = +3
Query: 438 TWK-NECNTCWCTSDGKPMCTRVE*SLITLPRSLS*SKAEIAL-RDRRGRTSVTVVGAMP 611
+WK ++C+TC+C +GK C + + + RD G
Sbjct: 357 SWKPDDCSTCFCKKNGKVECAHQMCGYPVCANPIKETGHCCPICRDEIVDEGRGEDGGDV 416
Query: 612 MDTPFVVTKPVLNTLTSLRKTVPPKTMWK-NECNTCWCTSDGKPMCTK 752
+D P PV + MW+ ++C C C SD K CTK
Sbjct: 417 VDDPHSCPDPVTGDYYHRFE------MWQQDDCTACICGSDRKLQCTK 458
>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 439 VVFGAQSFFGSLMCSAQASSLQMAYPSALH 350
V+ AQS G+L+C SS+++ PS+LH
Sbjct: 69 VIQSAQSSGGTLVCDNNESSIELLDPSSLH 98
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Frame = +3
Query: 273 PKKSELIQGRECAPGSTWSNQCNSCRCNAD----GYAICS--DEACAEHI-----NEPKK 419
P L EC P + N N C NAD YA CS + C +I NE ++
Sbjct: 220 PSNMFLCPSGECIPTTALCNNENDCSDNADERNCQYANCSLNNLGCRRNIDITQVNEEER 279
Query: 420 DCAP--NTTWKNECN 458
C P +T NEC+
Sbjct: 280 KCKPLLSTYVDNECH 294
>SB_8687| Best HMM Match : RCSD (HMM E-Value=0.25)
Length = 476
Score = 29.9 bits (64), Expect = 2.6
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 4/149 (2%)
Frame = +1
Query: 49 RECAPGSSWSNQCNSCRCNADGYGICSDEACTEHIIEPKKECAP-KTMWKNECNTCWCTS 225
++C + C C+ G +DE C + +P K + C C
Sbjct: 197 KKCETSCDGGKHIDKCTCDKSKCGETNDEPCKKCQTNKCAATSPQKCDVTGQAAKCACPK 256
Query: 226 DGK-PMCTRMDA--SLITLPRSLS*SKAENALRDQRGRTSVTVVGAMPMDTPFVVTKLVL 396
+ P+ R+ +++ LPR LS K A R G +V VV + + V LV+
Sbjct: 257 QNQSPVMQRVFGIPAVMVLPRVLSLRKILQA-RSVVGVMNVAVVASRVVVVMNAVVVLVV 315
Query: 397 NTLTSQKKTVRRILHGKMNATRVGALRTV 483
+ S V ++ + T V TV
Sbjct: 316 VVVASHVAAVTNVVVVSLVVTAVTVATTV 344
>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1820
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 363 GYAICSDEACAEHINEPKKDCAPNT-TW--KNECNTCWCTSDGKPMCTRVE*SLITLPRS 533
G A+C +EH P K+C P T TW K N CT P+ V +TLP
Sbjct: 794 GCALCKANQYSEHQARPCKNCPPGTNTWGRKGVVNKANCTG-RNPI--NVSEKTVTLPFG 850
Query: 534 L 536
L
Sbjct: 851 L 851
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +3
Query: 303 ECAPGSTWSNQCNSCRCNADGYAICSDEACAEHINEPKK--DCAPNTTWKNECNTC 464
+C P QCN C+ G+ C C NE DC PNT N C C
Sbjct: 659 QCRP-YVIGRQCNRCKTGYYGFPNCKKCQCV-FCNEETGACDCPPNTVGLN-CELC 711
>SB_58034| Best HMM Match : VWA (HMM E-Value=0)
Length = 1203
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 758 PHLSAHGFT--VRSAPTRVAFIFPHSLRRHSLS*ARQCVQHRLRHYKWRIHR 609
P + AH FT V++A T + F R H+L+ + V R+R Y +R R
Sbjct: 495 PRIRAHAFTLLVKAAHTPIHFHAFEKSRAHALTLLVKAVHTRIRFYAFRKSR 546
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 306 CAPGSTWSNQCNSCRCNADGYAICSDEACAE--HINEPKKDCAPNTTWKNECNTCWCTSD 479
C P S ++ +CNA +IC C E + ++ +DC P C+ WC D
Sbjct: 83 CRPCSLCPHKKVIQKCNATQNSICDTRNCEEGFYYDDITRDCQP-------CS--WCCGD 133
Query: 480 GK 485
GK
Sbjct: 134 GK 135
>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
Length = 1702
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 592 VTLVRPRRSRSAISALDQLRLLGSVISDHSTLVHMGLPSEVHQHVLHSFFHVVFGAQS 419
+TLV +R + +S +D L+ +S+ TLV + P++ H V H V+ S
Sbjct: 1404 LTLVSGQRYYTVVSCVDNAGLVTEAVSEEGTLVDVTPPTKGHVIVSPDRTHDVYHIHS 1461
>SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)
Length = 218
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Frame = +1
Query: 85 CNSCRCNADGYGICS---------DEACTEHIIEPKKECAP 180
C C CN+ CS D AC ++++EP K+C P
Sbjct: 104 CQKCECNSGKASSCSIGYHCDALLDGACEKYVLEP-KQCCP 143
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -1
Query: 654 MCSAQASSLQMAYPSALHLQLLHWFDHVDPGAQSLPWISSDFLGVLLVIIPP 499
M + A+ P+ + + +FDHV A W + L +L + PP
Sbjct: 319 MFKSNANESYFTNPNLYRQRWVKYFDHVKSKATDAIWFGTKLLNTVLRVAPP 370
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -2
Query: 242 HMGLPSEVHQHVLHSFFHIVFGAHSFFGSIMCSVQ-ASSLQMPYPSALHLQLLHWFD 75
H+G+P E Q V + + + F S+ C + ASS++ PYPSA++++ L +FD
Sbjct: 457 HLGIPGEFIQ-VFGDWASDAYRGYLEF-SMPCKLALASSIRTPYPSAVNVRPL-FFD 510
>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
Length = 514
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 568 SRSAISALDQLRLLGSVISDHSTLVHMGLPSEVHQHVLHSFFH 440
+R I + L G++ DH V GLP+ + + + S+FH
Sbjct: 18 NRKLIEGMTSTLLQGALFRDHDDKV--GLPAAIRDNPMESYFH 58
>SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)
Length = 203
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 229 HPKCTNTCCIHFSTSSSAHILSL-AR*CVQCRLRHYKCRIHRHCT 98
HP CTNT C S++ I R +Q + R C HR C+
Sbjct: 43 HPICTNTSCGLLRECSTSRIARFPKRDFIQNQERKTSCFNHRFCS 87
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +1
Query: 64 GSSWSNQC----NSC----RCNADGYGICSDEACTEHIIEPKKECAPKTMWKNECN 207
G +++N+C +SC + G C +AC+ H+ E ++C KT +++EC+
Sbjct: 973 GKTYTNECLLKVDSCAEQKEISVKHKGAC--DACSNHVCEENEDCDKKT-YQSECH 1025
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +3
Query: 306 CAPGSTWSNQCNSCRCNADGYAICSDEACAEHINEPKKDCAPNTT 440
C GS S+ CN RC + + + + NE + P +T
Sbjct: 200 CPMGSLCSSSCNFARCKCVQFVLTAHGQMTRYENEAARKILPGST 244
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 315 GSTWSNQCNSCRCNADGYAICSDEACAEHINEPKKDCAPNTTWKNECNTCWCTSDG 482
G+ + QC +C CN +G S + +H+ + C N + +C+ C S G
Sbjct: 143 GNATAQQCKACDCNVNG----SSSSLCDHVT-GQCSCKENVVGR-DCSRCKVNSYG 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,854,775
Number of Sequences: 59808
Number of extensions: 765595
Number of successful extensions: 2583
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2570
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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