Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40187
(816 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma mem... 38 0.008
At1g59950.1 68414.m06753 aldo/keto reductase, putative similar t... 31 0.91
At1g28080.1 68414.m03437 expressed protein 30 2.1
At4g33110.1 68417.m04717 coclaurine N-methyltransferase, putativ... 29 2.8
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 29 3.7
At3g02150.2 68416.m00185 TCP family transcription factor, putati... 29 4.9
At3g02150.1 68416.m00184 TCP family transcription factor, putati... 29 4.9
At1g59960.1 68414.m06754 aldo/keto reductase, putative similar t... 29 4.9
At1g34580.1 68414.m04298 monosaccharide transporter, putative si... 29 4.9
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 6.4
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 28 6.4
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 28 8.5
At4g00300.1 68417.m00037 fringe-related protein + weak similarit... 28 8.5
At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger) fa... 28 8.5
>At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma
membrane-type, putative / Ca(2+)-ATPase, putative
(ACA12) identical to SP|Q9LY77 Potential
calcium-transporting ATPase 12, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 12) {Arabidopsis
thaliana}; similar to SP|Q9LF79 Calcium-transporting
ATPase 8, plasma membrane-type (EC 3.6.3.8)
(Ca2+-ATPase, isoform 8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1033
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = -3
Query: 811 VSNFSRERQFPKLLIMSTPILVHMGLPSEVHQHVLHSFFHIVFGGTVFLRLVNVFSTGFV 632
+SNF +ERQF KL +S I V + L QH+ S F +V G VFL++ + +
Sbjct: 209 LSNFRQERQFDKLSKISNNIKVEV-LRDSRRQHI--SIFDVVVGDVVFLKIGDQIPADGL 265
Query: 631 TTNGVSIGIAPTTVT 587
G S+ + +++T
Sbjct: 266 FLEGHSLQVDESSMT 280
>At1g59950.1 68414.m06753 aldo/keto reductase, putative similar to
NADPH-dependent codeinone reductase GI:6478210 [Papaver
somniferum], NAD(P)H dependent 6'-deoxychalcone synthase
[Glycine max][GI:18728]
Length = 320
Score = 31.1 bits (67), Expect = 0.91
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = -3
Query: 412 GSLMCSAQASSLQMAYPSALHLQLLHWFDHVDPGAHSLPWISSDFLGV---LLVMHPS*C 242
G L+ A SL+ L L L+HW PG + P DFL + + C
Sbjct: 92 GGLVVPAIQRSLETLKLDYLDLYLIHWPVSSKPGKYKFPIEEDDFLPMDYETVWSEMEEC 151
Query: 241 TWVYHPKCTNTCCIHFSTSSSAHILSLAR 155
+ KC +FS HILS+A+
Sbjct: 152 QRLGVAKCIGVS--NFSCKKLQHILSIAK 178
>At1g28080.1 68414.m03437 expressed protein
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 512 TNNTPKKSELIQGRDCAPGSTWSNQCNSCRCNADGYAICSDEACAEHIDEPK 667
TNN + D APGST +S DG A +D C+ ++D+ K
Sbjct: 30 TNNQDPSGDTCSVSDPAPGSTDYYNISSSPVKDDGTAPKNDVVCSINVDDNK 81
>At4g33110.1 68417.m04717 coclaurine N-methyltransferase, putative
similar to coclaurine N-methyltransferase [Coptis
japonica] GI:16754879; contains Pfam profile PF02353:
Cyclopropane-fatty-acyl-phospholipid synthase
Length = 355
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 293 DQLRLLGSVISDASILVHMGLPSEVHQHVLHSFFHIVFGAHSFFGSIMCSVQASSLQ 123
D LR + S I I +H P H + +FF +V G + + S S +SSL+
Sbjct: 56 DLLRFVDS-IKKMPIAIHTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSSSLE 111
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = -3
Query: 544 DQLRLLGSVISDHSTLVHMGLPSEVHQHVLHSFFHVVFGAQSFFGSLMCSAQASSLQMAY 365
D LR + S I +H P H + +FF +V G + S S +SSL+ A
Sbjct: 56 DLLRFVDS-IKKMPIAIHTEKPKTQHYELPTAFFELVLGRNMKYSSCYFSNDSSSLEDAE 114
Query: 364 PSALHL 347
+ L L
Sbjct: 115 EAILAL 120
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 29.1 bits (62), Expect = 3.7
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = -3
Query: 703 SFFHIVFGGTVFLRLVNVFSTGFVTTNGVSIGIAPTTVTLVRPRRSRSAISALDQLRLL- 527
S H+V G +F++L G + T V ++ T+ V+ + S DQ LL
Sbjct: 385 STLHLVLGMQIFVKLFG----GKIITLEV---LSSDTIKSVKAKIQDKVGSPPDQQILLF 437
Query: 526 -GSVISDHSTLVHMGLPSEVHQHVLHSFFHVVFGAQSFFGSLMCSAQ 389
G + D TL + +E LH FFH+ G Q F + S +
Sbjct: 438 RGGQLQDGRTLGDYNIRNE---STLHLFFHIRHGMQIFVKTFSFSGE 481
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = -3
Query: 721 HQHVLHSFFHIVFGGTVFLRLVNVFSTGFVTTNGVSIGI-APTTVTLVRPRRSRSAISAL 545
++ LH FFHI G +F++ + FS T +++ + + T+ V+ + L
Sbjct: 455 NESTLHLFFHIRHGMQIFVKTFS-FSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPL 513
Query: 544 DQLRLL--GSVISDHSTLVHMGLP--SEVHQ 464
D+ RL+ G V+ TL+ + S +HQ
Sbjct: 514 DRQRLIFGGRVLVGSRTLLDYNIQKGSTIHQ 544
>At3g02150.2 68416.m00185 TCP family transcription factor, putative
similar to transcription factor PCF6 [Oryza sativa
(japonica cultivar-group)] GI:20975255; contains Pfam
profile PF03634: TCP family transcription factor
Length = 355
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 493 HMGLPSEVHQHVLHSFFHVVFGAQSFFGSLMCSAQASSLQMAYPSA 356
H+ L ++ H H LHS V F +Q + S +++Q +PS+
Sbjct: 219 HLSLQADYHSHQLHSL--VPFPSQILVCPMTTSPTTTTIQSLFPSS 262
>At3g02150.1 68416.m00184 TCP family transcription factor, putative
similar to transcription factor PCF6 [Oryza sativa
(japonica cultivar-group)] GI:20975255; contains Pfam
profile PF03634: TCP family transcription factor
Length = 278
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 493 HMGLPSEVHQHVLHSFFHVVFGAQSFFGSLMCSAQASSLQMAYPSA 356
H+ L ++ H H LHS V F +Q + S +++Q +PS+
Sbjct: 219 HLSLQADYHSHQLHSL--VPFPSQILVCPMTTSPTTTTIQSLFPSS 262
>At1g59960.1 68414.m06754 aldo/keto reductase, putative similar to
NADPH-dependent codeinone reductase GI:6478210 [Papaver
somniferum], NAD(P)H dependent 6'-deoxychalcone synthase
[Glycine max][GI:18728]
Length = 326
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = -3
Query: 412 GSLMCSAQASSLQMAYPSALHLQLLHWFDHVDPGAHSLPWISSDFLGV---LLVMHPS*C 242
G L+ A SL+ L L ++HW PG + P DF+ + ++ C
Sbjct: 98 GGLVVPAIKRSLKNLKLDYLDLYIIHWPVSSKPGKYKFPIDEDDFMPMDFEVVWSEMEEC 157
Query: 241 TWVYHPKCTNTCCIHFSTSSSAHILSLA 158
+ KC +FS HILS+A
Sbjct: 158 QRLGLAKCIGVS--NFSCKKLQHILSIA 183
>At1g34580.1 68414.m04298 monosaccharide transporter, putative
similar to monosaccharide transporter 3 [Oryza sativa]
GI:11991114, monosaccharide transporter [Nicotiana
tabacum] GI:19885, monosaccharide transporter 1 [Oryza
sativa] GI:11991110; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 506
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 237 GFTIRSAPTRVAFIFPHRLRRTFFLWLDNVFSAGFVTTNAVSIG 106
GFT ++AP ++ + P R R F + S G V N ++ G
Sbjct: 148 GFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYG 191
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 725 SAPTRVAFIFPHSLRRHSLS*A-RQCVQHRLRHYKWRIHRH 606
S PT + PH L LS Q + HRLRH HRH
Sbjct: 619 STPTPGTLLHPHHLLLPQLSHLPHQYLHHRLRHILPSRHRH 659
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 124 KCRIHRHCTYNCYTGSTTTIPERILC-PG 41
KC I+ HC +N Y ST+T C PG
Sbjct: 286 KCDIYNHCGFNGYCDSTSTEKFECSCLPG 314
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 574 RRSRSAISALDQLRLLGSVISDHSTLVHMGLPSEVHQHV 458
R+S+S I + G D S +V MGLPS+ Q++
Sbjct: 385 RKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYI 423
>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 785
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 511 DHSTLVHMGLPSEVHQHVLHSF-FHVVFGAQSF 416
DH ++G PSE H LH F + + +G F
Sbjct: 202 DHKQFYYIGAPSESHLQNLHQFSYGMAYGGGGF 234
>At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 275
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 372 ICSDEACAEHINEPKKDCAPNTTWK---NECNTCWCTSDGKPMC 494
ICSDE+ E++ P CA + + K +C WC G +C
Sbjct: 45 ICSDESPVENLESP---CACSGSLKYAHRKCVQRWCNEKGNIIC 85
>At2g02960.4 68415.m00247 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 372 ICSDEACAEHINEPKKDCAPNTTWK---NECNTCWCTSDGKPMC 494
ICSDE+ E++ P CA + + K +C WC G +C
Sbjct: 45 ICSDESPVENLESP---CACSGSLKYAHRKCVQRWCNEKGNIIC 85
>At2g02960.3 68415.m00246 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 372 ICSDEACAEHINEPKKDCAPNTTWK---NECNTCWCTSDGKPMC 494
ICSDE+ E++ P CA + + K +C WC G +C
Sbjct: 45 ICSDESPVENLESP---CACSGSLKYAHRKCVQRWCNEKGNIIC 85
>At2g02960.2 68415.m00245 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 372 ICSDEACAEHINEPKKDCAPNTTWK---NECNTCWCTSDGKPMC 494
ICSDE+ E++ P CA + + K +C WC G +C
Sbjct: 45 ICSDESPVENLESP---CACSGSLKYAHRKCVQRWCNEKGNIIC 85
>At2g02960.1 68415.m00244 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger); contains PROSITE
PS00190: Cytochrome c family heme-binding site signature
Length = 271
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 372 ICSDEACAEHINEPKKDCAPNTTWK---NECNTCWCTSDGKPMC 494
ICSDE+ E++ P CA + + K +C WC G +C
Sbjct: 45 ICSDESPVENLESP---CACSGSLKYAHRKCVQRWCNEKGNIIC 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,842,909
Number of Sequences: 28952
Number of extensions: 497165
Number of successful extensions: 1579
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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