Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40186
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    28   0.37 
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    27   0.64 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   2.0  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   4.5  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   FYRDPEESEKDEQQ 43
           FYRDPEE E++E+Q
Sbjct: 206 FYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   FYRDPEESEKDEQQAK 49
           FYRDPEE E++E+  K
Sbjct: 205 FYRDPEEVEREEEAKK 220


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 151 PTCCTRCSSCFWSTP 195
           PTCC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 305 LQF*ADPPHEGAAVAAAVRRQLCSTHLVPGQTILLEQG-VLQKQE---LQRVQQVGRYLQ 138
           L F  +    G ++   +  Q    H+VPG+  +LE   V+ +QE    Q  ++    LQ
Sbjct: 161 LHFLFENVSNGGSIIIKLINQHIDIHIVPGRPTVLENAKVINEQEGITGQSFERGDAQLQ 220

Query: 137 PMK 129
           P+K
Sbjct: 221 PVK 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,655
Number of Sequences: 5004
Number of extensions: 17628
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)