Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40186
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0663 - 18487295-18487795 33 0.083
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 0.78
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 29 1.0
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 1.8
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 28 1.8
02_05_1258 + 35290183-35290198,35290292-35290599,35290844-352909... 28 1.8
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 28 2.4
09_04_0240 + 15958110-15958305,15959586-15960763 28 2.4
12_02_1057 + 25733376-25735439 27 4.1
08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294 27 5.5
06_03_1330 - 29375494-29376912 27 5.5
03_01_0332 + 2621058-2621348,2621505-2622263 27 5.5
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 27 5.5
01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206... 27 5.5
10_01_0201 + 2175660-2176892 26 7.2
08_02_1490 + 27495155-27495334,27495437-27495746,27495865-274959... 26 7.2
05_04_0161 + 18635635-18635788,18637117-18637295,18638032-186381... 26 9.6
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 26 9.6
01_01_0804 + 6256915-6257024,6257141-6257264 26 9.6
>04_03_0663 - 18487295-18487795
Length = 166
Score = 32.7 bits (71), Expect = 0.083
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 272 AAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQELQRVQQVG 150
+A+AAAV T + P QT + +Q QKQ QR+Q++G
Sbjct: 50 SALAAAVPASKPPTQIKPNQTKIKQQEENQKQSSQRIQKLG 90
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 0.78
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 163 TRCSSCFWSTPCSRRMVCPGTR*VEHN 243
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 163 TRCSSCFWSTPCSRRMVCPGTR 228
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 281 HEGAAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQE 174
H+G +A A LC+ ++VPG+++ E+ + + E
Sbjct: 78 HDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 113
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 163 TRCSSCFWSTPCSRRMVCPGTR*VEHN 243
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 2 FYRDPEESEKDEQQAKEQ 55
FYRDPEE+++ E++A Q
Sbjct: 207 FYRDPEEAKEQEEEAPAQ 224
>02_05_1258 +
35290183-35290198,35290292-35290599,35290844-35290939,
35291067-35291144,35291224-35291400,35292738-35292806,
35292917-35293093
Length = 306
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 281 HEGAAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQE 174
H G +A A LC+ ++VPG+++ E+ + + E
Sbjct: 75 HNGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNE 110
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 343 CNIINQCRVFMQHSSFERIHPTRALRWRRLCGGS 242
C +I +C ++ +S R R+ RWRR GG+
Sbjct: 1248 CAMIEECNDDVEEASRRRSSRRRSGRWRRRVGGT 1281
>09_04_0240 + 15958110-15958305,15959586-15960763
Length = 457
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 187 STPCSRRMVCPGTR*V-EHNCRRTAAATAAPSWGGSA 294
S PC R +V T V RR AAA +WGG A
Sbjct: 301 SLPCRRALVSVATEDVLRDRGRRYAAALRGGAWGGEA 337
>12_02_1057 + 25733376-25735439
Length = 687
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 115 TGASRFMG*R--YRPTCCTRCSSCFWSTPCSRRMVCPGTR*VEHN 243
TGA + G Y T+C C P VCPG+R + N
Sbjct: 75 TGADQVFGLIMCYADRNSTQCQECLAGAPAGIVQVCPGSRTADAN 119
>08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294
Length = 358
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 213 LPRYKMSGAQLPPHSRRHRSALVGWIRSKLECCINTLH 326
L + +S +LPPH R A++ LE ++ +H
Sbjct: 163 LTKLSLSEVELPPHGERQLEAMIAASPLLLELSLDNVH 200
>06_03_1330 - 29375494-29376912
Length = 472
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 151 PTCCTRCSSCFWSTPCSRRMV--CPGTR*VEHNCRRTAAA 264
P CC +C S PCS+ +V PG H R A A
Sbjct: 305 PPCCCSGRACSMSIPCSKYLVELSPGHLLQVHRLRDKAHA 344
>03_01_0332 + 2621058-2621348,2621505-2622263
Length = 349
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 252 HSRRHRSALVGWIRSKLECCINTLH 326
HSRR + +VG K CCI+ +H
Sbjct: 7 HSRRFLNLIVGMSGVKSLCCIDLMH 31
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 313 MQHSSFERIHPTRALRWRRLCGG 245
M H+ ER PT+ +R+ +LCGG
Sbjct: 679 MNHAK-ERKQPTKQIRYCKLCGG 700
>01_06_1572 +
38319544-38319849,38320427-38320513,38320584-38320676,
38321491-38321567,38321974-38322562,38322701-38322794,
38322884-38322996,38323438-38323524,38323842-38323964,
38324058-38324192,38324437-38324484,38324993-38325094,
38325321-38325716
Length = 749
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 278 EGAAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQ 177
+ A AA RRQ+ S L PG+T ++ L K+
Sbjct: 36 QAPAAAAGCRRQVFSVELRPGETTIVSWKKLLKE 69
>10_01_0201 + 2175660-2176892
Length = 410
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 293 ADPPHEGAAVAAAVRR 246
A+PPH AA AAAV R
Sbjct: 86 AEPPHPSAATAAAVAR 101
>08_02_1490 +
27495155-27495334,27495437-27495746,27495865-27495965,
27496620-27496661,27496763-27496884,27496954-27497062,
27497309-27497362
Length = 305
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -2
Query: 293 ADPPHEGAAVAAAVRRQLCSTHLVPGQTILLEQGVLQKQE 174
A PP + AA AAA RR T L + L VLQ+QE
Sbjct: 24 AAPPDDSAAAAAAGRRPF--TSLTQEEADLALARVLQEQE 61
>05_04_0161 +
18635635-18635788,18637117-18637295,18638032-18638145,
18638274-18638368,18638604-18638710,18639455-18639528,
18641170-18641400,18641892-18642197
Length = 419
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 196 CSRRMV---CPGTR*VEHNCRRTAAATAAPSWGGSAQN 300
CSR+++ CPGT + H+ A SWG + N
Sbjct: 87 CSRQILQDECPGTNKISHDKIAARKAPFKLSWGCNGDN 124
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/44 (20%), Positives = 22/44 (50%)
Frame = +3
Query: 204 KNGLPRYKMSGAQLPPHSRRHRSALVGWIRSKLECCINTLHWLI 335
K + + +M + P RRH+S + +++C + + W++
Sbjct: 595 KYDIVKLEMEDTYIDPKKRRHKSRITNKHYYQVDCFNDVIDWIL 638
>01_01_0804 + 6256915-6257024,6257141-6257264
Length = 77
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 253 CGGSCAPLILYLGRPFFL 200
CGG C P+ LG PF L
Sbjct: 4 CGGDCRPIGWLLGLPFAL 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,452,054
Number of Sequences: 37544
Number of extensions: 143929
Number of successful extensions: 502
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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