Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40186
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)                31   0.26 
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  27   4.3  
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          26   9.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 2   FYRDPEESEKDEQQA 46
           FYRDPEE+EK+EQ A
Sbjct: 203 FYRDPEEAEKEEQAA 217


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 218 GQTILLEQGVLQKQELQRVQQVGRYLQPMKRLAPVF 111
           GQ +L    VL ++ L+R    GRY QP  R AP+F
Sbjct: 99  GQQVLARGSVL-RERLKR--STGRYQQPEMRRAPMF 131


>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 206 LLEQGVLQKQELQRVQQVGRYLQPMKRLAPVFHSSL 99
           L  QGV+Q+ E      VGRY +P   L P   S+L
Sbjct: 430 LESQGVVQRPEDIGFADVGRYSKPQPSLMPNVDSTL 465


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 27   KRMNNKPRNRLWYQLNQK*LLLSMKTGMKHWS 122
            KR+NNK   + W +L +    L+ K  M  W+
Sbjct: 928  KRINNKKGEKYWQKLRRLEQKLAKKAEMAKWN 959


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,378
Number of Sequences: 59808
Number of extensions: 151050
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)