Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40186
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   0.71 
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    26   8.7  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    26   8.7  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    26   8.7  

>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 157 CCTRCSSCFWSTPCSRRMVCP 219
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +1

Query: 148 RPTCCTRCSSCFWSTPCSRRMVCPGTR*VEHNCRRTAAATAAP 276
           R  CCTRC +C     C     C G     H  + TA A   P
Sbjct: 105 RTCCCTRCCTCCRPCCCGCGCGCCGCGGGGHFLKSTAMARPKP 147


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 124 WLQCFIPVFMDRSNYFWFSWYHS 56
           WL CF  +       F+ +W+HS
Sbjct: 302 WLNCFSEMMQFADRQFYLNWWHS 324


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 145 YRPTCCTRCSSCFWSTPCSRRMVC 216
           YR  C   CS CF+S   S    C
Sbjct: 240 YRSVCPKSCSQCFYSNSTSSYECC 263


>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 2   FYRDPEESEKDEQQA 46
           FYRDP E+EK+E  A
Sbjct: 208 FYRDPTETEKEETGA 222


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 145 YRPTCCTRCSSCFWSTPCSRRMVC 216
           YR  C   CS CF+S   S    C
Sbjct: 240 YRSVCPKSCSQCFYSNSTSSYECC 263


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 145 YRPTCCTRCSSCFWSTPCSRRMVC 216
           YR  C   CS CF+S   S    C
Sbjct: 291 YRSVCPKSCSQCFYSNSTSSYECC 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,733,529
Number of Sequences: 27780
Number of extensions: 106548
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)