Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40186
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   9.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 309 CINTLHWLIILHES 350
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 309 CINTLHWLIILHES 350
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 238 HNCRRTAAATAA 273
           +NC+RTA  TAA
Sbjct: 172 YNCKRTATITAA 183


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +2

Query: 23  SEKDEQQAKEQXXXXXXXXXXXXXHEDWNETLEPVASW 136
           +++ +QQ ++Q              + W    EP ASW
Sbjct: 437 AQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASW 474


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 261 RHRSALVGW 287
           RH S L+GW
Sbjct: 391 RHTSVLIGW 399


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 284 VDPLKTGVLHK 316
           VDP +TG  HK
Sbjct: 165 VDPFRTGFEHK 175


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 284 VDPLKTGVLHK 316
           VDP +TG  HK
Sbjct: 165 VDPFRTGFEHK 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,375
Number of Sequences: 438
Number of extensions: 1363
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)