Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40186
         (351 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23060.1 68418.m02696 expressed protein                             27   3.5  
At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof...    27   4.6  
At1g79410.1 68414.m09254 transporter-related low similarity to o...    27   4.6  
At3g63180.1 68416.m07097 expressed protein                             26   6.1  
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    26   8.1  
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa...    26   8.1  

>At5g23060.1 68418.m02696 expressed protein
          Length = 387

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -2

Query: 329 PVQSIYAALQF*ADPPHEGAAVAAAVRRQLCSTHLVPGQTI--LLEQGVLQKQELQRV-Q 159
           P  +  + L   A PPHE  A  +  + Q+ S+     +TI  + E G       QRV Q
Sbjct: 37  PTSTSISLLSLFASPPHEAKAAVSIPKDQIVSSLTEVEKTINQVQETGSSVFDATQRVFQ 96

Query: 158 QVGRYLQP 135
            VG  L+P
Sbjct: 97  VVGDALKP 104


>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
           PF04784: Protein of unknown function, DUF547, weak hit
           to PF00462: Glutaredoxin
          Length = 587

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = -3

Query: 349 LSCNIINQCRVFMQHSSFER------IHPTRALRWRRLCGGSCAPLILY 221
           L C     CR+F+             I+PTR +   ++ GG   P++ +
Sbjct: 232 LGCEECRGCRLFLHEKRLRYVEINIDIYPTRKVELEKISGGDVVPMVFF 280


>At1g79410.1 68414.m09254 transporter-related low similarity to
           organic anion transporter 3 [Rattus norvegicus]
           GI:5545293; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 515

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 280 TRALRWRRLCGGSCAPLILYLGR 212
           T  LR   + GG+C PLI  LGR
Sbjct: 441 TMMLRQALVVGGACCPLIASLGR 463


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 278 EGAAVAAAVRR-QLCSTHLVPGQTILLEQGVLQKQELQRVQQVGRYLQPMKRLAPVFHSS 102
           +GA ++A+  R + C+TH    + I L Q  L+   L    +   YL+         + S
Sbjct: 424 QGAPISASQPRPKRCATHFFIARNIQLHQHFLKTNHLPTPNKGSVYLKGGDLRPTAGNPS 483

Query: 101 LHG 93
           LHG
Sbjct: 484 LHG 486


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 30  RMNNKPRNRLWYQLNQK*LLLS 95
           +++++PR+R W QLN K L LS
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLS 75


>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 343

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 157 CCTRCSSCFWSTPCSRRMV 213
           CCT CSS   S P  RR +
Sbjct: 316 CCTACSSHLTSCPLCRRRI 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,416,073
Number of Sequences: 28952
Number of extensions: 99031
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)