Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40185
         (807 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger...   132   8e-30
UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine O-methyltra...    38   0.39 
UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D000...    36   0.91 
UniRef50_Q24T39 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_A5Z3E6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q6BGI0 Cluster: TRNA-splicing endonuclease positive eff...    34   3.7  
UniRef50_Q9HA38 Cluster: Zinc finger matrin-type protein 3; n=20...    33   6.4  
UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep...    33   8.5  

>UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger
           protein JAZ; n=1; Bombyx mori|Rep: Double-stranded
           RNA-binding zinc finger protein JAZ - Bombyx mori (Silk
           moth)
          Length = 430

 Score =  132 bits (320), Expect = 8e-30
 Identities = 83/177 (46%), Positives = 88/177 (49%)
 Frame = +3

Query: 276 KIRNNEYSNAFGNYNGGYWSDDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNPFGRG 455
           KIRNNEYSNAFGNYNGGYWSDDQ                             NQNPFGRG
Sbjct: 33  KIRNNEYSNAFGNYNGGYWSDDQGPGPFDHPPRPPPNFMFGPGPGPMFGPLPNQNPFGRG 92

Query: 456 FGPDGPAMRRPNRVERVKDI*CVVDLQRTV*KTFLEKYCTK*SLSTVVFVLLNWTLLECL 635
           FGPDGPAMRRPNRVERVK       L +   K    +   K          L        
Sbjct: 93  FGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMS 152

Query: 636 VCITFQKIMAKNLRKWGVEIE*WWI*FRKEIPL*NHVSWYCELCDVHITSKSHADSH 806
                 K  AKNLRKW  +        +KEIPL +    Y ELCDVHITSKSHADSH
Sbjct: 153 RLHYLSKNHAKNLRKWVSKSNDGGS-NQKEIPLKSR-ELYGELCDVHITSKSHADSH 207



 Score =  119 bits (286), Expect = 1e-25
 Identities = 58/81 (71%), Positives = 64/81 (79%)
 Frame = +2

Query: 509 RYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHGEESEKMGC 688
           RYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNH +   K   
Sbjct: 111 RYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRKWVS 170

Query: 689 RNRMMVDLIQKRDSTLKSREL 751
           ++        +++  LKSREL
Sbjct: 171 KSNDGGS--NQKEIPLKSREL 189



 Score = 60.5 bits (140), Expect = 5e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +1

Query: 181 MSIPFYKMNSREEYEMNEDCGWTED 255
           MSIPFYKMNSREEYEMNEDCGWTE+
Sbjct: 1   MSIPFYKMNSREEYEMNEDCGWTEE 25


>UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine
           O-methyltransferase; n=4; Saccharomycetaceae|Rep:
           Protein-S-isoprenylcysteine O-methyltransferase -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 239

 Score = 37.5 bits (83), Expect = 0.39
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -2

Query: 503 SLHSVRSSHSRAIRTKSSSEWVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPIS 324
           ++H+   S S  ++TK  S+ VL+    K   +SWS+H    G +W    ++ L++ P+S
Sbjct: 139 AMHTAGHSFSHIVKTKKESDHVLV----KTGVYSWSRHPSYLGFFWWAIGTQLLLLNPLS 194

Query: 323 PIV 315
            ++
Sbjct: 195 LVI 197


>UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D0005;
           n=5; Pezizomycotina|Rep: Part of an hypothetical protein
           Pa5D0005 - Podospora anserina
          Length = 154

 Score = 36.3 bits (80), Expect = 0.91
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 419 KHWSWSWSKHEVRRGSW 369
           +HW W W+ H+VRRG W
Sbjct: 118 QHWQWRWNVHKVRRGDW 134


>UniRef50_Q24T39 Cluster: Putative uncharacterized protein; n=1;
           Desulfitobacterium hafniense Y51|Rep: Putative
           uncharacterized protein - Desulfitobacterium hafniense
           (strain Y51)
          Length = 376

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 587 EYCGVCALELDSFGMSRLHYLSKNHGEESEKMGCRNRMMVDL 712
           EY  +CA  LDS G+S   ++SKN GEE  ++  R+  ++ L
Sbjct: 62  EYARICAAILDSLGVSVGAFISKNPGEEDVQLSGRSIPVISL 103


>UniRef50_A5Z3E6 Cluster: Putative uncharacterized protein; n=1;
            Eubacterium ventriosum ATCC 27560|Rep: Putative
            uncharacterized protein - Eubacterium ventriosum ATCC
            27560
          Length = 1746

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 382  RTSCLDQDQDQCLGLYPIKTHSEEDLVRMALLCEDLTEWRELKIFNALWTYKGQFE 549
            R  C D +++  + L   KT ++ D V   LL    TEW+ +K  N +   +GQ++
Sbjct: 1321 RVQCTDTNKNSAIKL---KTDNDSDYVLTTLLDNSTTEWKNVKTANTVHLKQGQYQ 1373


>UniRef50_Q6BGI0 Cluster: TRNA-splicing endonuclease positive
           effector, putative; n=1; Paramecium tetraurelia|Rep:
           TRNA-splicing endonuclease positive effector, putative -
           Paramecium tetraurelia
          Length = 1124

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 734 KWNLFSELDPPSFDFDTPFSQILRHDFLKGNANETFQKSPIQEHKHHSTQALFCAIF 564
           K  +F+E   P F+F++    +   D+ K + NET+ K P    K   +   +C IF
Sbjct: 226 KCGIFTETGKPIFEFNSLIKYLFLKDYSKDSENETYNKIP----KKFKSDVEYCKIF 278


>UniRef50_Q9HA38 Cluster: Zinc finger matrin-type protein 3; n=20;
           Euteleostomi|Rep: Zinc finger matrin-type protein 3 -
           Homo sapiens (Human)
          Length = 289

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 581 EPEYCGVCALELDSFGMSRLHYLSKNHGEE 670
           +P YC +C + L+S   ++ HY  KNHG++
Sbjct: 68  KPLYCKLCNVTLNSAQQAQAHYQGKNHGKK 97


>UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep:
           F21J9.11 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 191

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 286 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 459
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 460 VRMALLC 480
              A+LC
Sbjct: 146 SNSAILC 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,125,895
Number of Sequences: 1657284
Number of extensions: 16418312
Number of successful extensions: 42752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42731
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)