Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40185
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    31   0.82 
06_03_1134 + 27892208-27892302,27892489-27892585,27893031-278930...    30   1.9  
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    29   5.8  
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850...    28   7.6  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 506 NSLHSV--RSSHSRAIRTKSSSEWVLIG*RPKHWSWS-WSKHEVRRGSWWMI 360
           +S H V  RS H  A     +    + G RP HW  S   +   RRG WW++
Sbjct: 520 SSAHEVFWRSCHGVAYLCMENVVTEMAGCRPTHWPRSALVRQRRRRGGWWLV 571


>06_03_1134 +
           27892208-27892302,27892489-27892585,27893031-27893092,
           27893198-27893409,27893487-27893566,27894208-27894328,
           27894644-27894731,27894815-27894931,27895031-27895140,
           27895334-27895482
          Length = 376

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 199 KMNSREEYEMNEDCGWTEDHLDFREER*GITNTAMHLEITMGDIGLTTKVLD 354
           K   R E + N  C W++DH++   E  G T T     +++ D     KV D
Sbjct: 165 KKTRRREGDRNPFCYWSQDHVEGYLELSGKTKTYFATAVSLWDADFYVKVDD 216


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 253 LQSSHNLHSFHILHGCSFCRTE-YS*C*NRYWNVYELFQSIQRYYRFFS 110
           L+  H+LH+FH + G      E Y      +WN + +    Q  Y F S
Sbjct: 250 LELPHSLHAFHRVSGSDSLNMEGYHTYRGGFWNYFSMGMDAQVSYEFHS 298


>10_05_0043 +
           8503979-8504407,8506484-8506624,8506865-8506975,
           8507746-8508330
          Length = 421

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 578 IEPEYCGVCALELDSFGMSRLHYLSKNHGEESEKM 682
           ++P  C VC ++ D+  + R+H   K H +  E++
Sbjct: 275 VQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLERL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,245,144
Number of Sequences: 37544
Number of extensions: 435923
Number of successful extensions: 1105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)