Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40185
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     30   2.5  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          30   2.5  
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)                    29   3.4  
SB_25002| Best HMM Match : Gemini_mov (HMM E-Value=2.4)                29   5.9  
SB_22172| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   29   5.9  
SB_36481| Best HMM Match : DUF922 (HMM E-Value=1.8)                    28   7.7  
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)                   28   7.7  
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 686 TPFSQILRHDFLKGNANETFQKSPIQEHKHHSTQALFCAIFL*EC 552
           T   +I RH+      ++TF     QEH  H +QAL   I L  C
Sbjct: 740 TDLPEIDRHNTESPRVSKTFDSRSYQEHDGHESQALLEPIDLLSC 784


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 397  DQDQDQCLGLYPIKTHSEEDLVRMALLCEDLTEWRELK 510
            + D+ +C  LYP + + E DL     L +D T+W  +K
Sbjct: 3232 NSDEGRC-ALYPARCNFETDLCNWQQLTDDDTDWTRMK 3268


>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
          Length = 1442

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 753 YCELCDVHITSKSHADSH 806
           +CE C VH+ SKS A  H
Sbjct: 861 FCEYCKVHLNSKSQAQEH 878


>SB_25002| Best HMM Match : Gemini_mov (HMM E-Value=2.4)
          Length = 363

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 701 SFDFDTPFSQILRHDFLKGNAN-ETFQKSPIQEHKHHSTQALFC 573
           S D  T    ++R ++  G+   +    SP+Q HK ++  A++C
Sbjct: 22  SLDNSTLQKSVIRENYTGGDTGYQAITLSPLQRHKGYTVHAVYC 65


>SB_22172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +2

Query: 596 GVCALELDSFGMSRLHYLSKNHGEESEKMGCRNRMMVDL 712
           GV ++ L S+ +S LH LS+NH    ++ G +++ ++DL
Sbjct: 261 GVTSVPLPSY-LSNLHSLSQNHFLLKDRKGSQHKEVLDL 298


>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 169

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 148 VHKHSNTGFSIMSIPFYKMNSREEYEMNEDCGWTEDHLD 264
           V   SN G    S P  +   +E +  + DC   EDH+D
Sbjct: 108 VQNESNNGVLPCSGPISQPGEQENHSQSVDCNDNEDHVD 146


>SB_36481| Best HMM Match : DUF922 (HMM E-Value=1.8)
          Length = 1150

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 389  EVRRGSWWMIKRSRTLVVRPISP-IVISKCIAVFVIPYLSSRKSRWSSVQPQSSFIS 222
            E R+ + +MIK   +L V+  S  + ++KC+ VF+  +LS  +S    V   SS ++
Sbjct: 1058 EARKVAAFMIKVFWSLKVKDTSVRLELAKCMQVFIESHLSDGESEDEGVNRSSSMLA 1114


>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
          Length = 889

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 444 FGRGFGPDGPAMRRPNRVERVKDI 515
           FG+ FGPDG  MR     +R +D+
Sbjct: 606 FGKDFGPDGVIMRGGTASDRSRDV 629


>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 433 IKTHSEEDLVRMALLCEDLTEWRELKIFNA---LWTYKGQFEKHS 558
           + T+ E  L R +LL E     RE  +  A   +WTYKG  EK S
Sbjct: 521 VATYHEVLLARSSLLLEASEPGREHSVVTASKSVWTYKGFVEKIS 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,139,398
Number of Sequences: 59808
Number of extensions: 517608
Number of successful extensions: 1386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)