Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40185
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    29   3.9  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    29   5.2  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 750 WYCELCDVHITSKSHADSH 806
           +YCE CD HI +  HA +H
Sbjct: 272 YYCEKCDYHINTIGHAKAH 290


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 205 NSREEYEMNEDCGWTEDHLDFREER 279
           +S EE E NE C W ED+LD  E R
Sbjct: 422 DSDEEEEDNEWCEWQEDNLDADETR 446


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 464  GWPCYAKT*QSGES*RYLMRCGLTKDSLKNIPREILHKIEPE 589
            G  C A    S  + R+L +C   ++SLKN   EIL   E E
Sbjct: 975  GGICNAMLRYSRANNRHLKKCNTEEESLKNYEEEILKNYEEE 1016


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 707 PPSFDFDTPFSQILRHDFLKGNANETFQKSPIQEH 603
           PP   F +PFS +L      G+ N   + SP + H
Sbjct: 537 PPQAHFSSPFSPMLDMSMASGHHNGNMRMSPSRRH 571


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 578 IEPEYCGVCALELDSFGMSRLHYLSKNHGEESEKM 682
           +EP YC  C   + S      H  SK H E  +K+
Sbjct: 68  VEPLYCKACRKSIKSENAMTDHVASKKHKENEKKI 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,081,338
Number of Sequences: 27780
Number of extensions: 411087
Number of successful extensions: 1148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)