Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40185
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24450.1 68414.m03080 ribonuclease III family protein contain...    33   0.22 
At1g48540.2 68414.m05428 leucine-rich repeat family protein            30   2.1  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            30   2.1  
At1g19030.1 68414.m02369 hypothetical protein                          29   2.7  
At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    29   3.6  
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    29   4.8  
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf...    28   6.3  
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR...    28   6.3  
At1g28590.1 68414.m03521 lipase, putative similar to lipase [Ara...    28   8.4  

>At1g24450.1 68414.m03080 ribonuclease III family protein contains
           similarity to Swiss-Prot:P51837 ribonuclease III (EC
           3.1.26.3) (RNase III) [Coxiella burnetii]
          Length = 191

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 286 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 459
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 460 VRMALLC 480
              A+LC
Sbjct: 146 SNSAILC 152


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 644 YLSKNHGEESEKMGCRNRMMVDLIQKRDSTLKSRELVL 757
           Y S      S +  CR  M  DLI ++ ST K RE VL
Sbjct: 789 YFSAKLSVSSSQETCRTYMNCDLILQKGSTYKQREAVL 826


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 644 YLSKNHGEESEKMGCRNRMMVDLIQKRDSTLKSRELVL 757
           Y S      S +  CR  M  DLI ++ ST K RE VL
Sbjct: 789 YFSAKLSVSSSQETCRTYMNCDLILQKGSTYKQREAVL 826


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 443 WVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRT 345
           W ++  R   W     K+ +RRGS+W++K + T
Sbjct: 121 WRILSARRSLWVELVKKYLIRRGSFWLVKENTT 153


>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 413 WSWSWSKHEVRRGSWWMIKRSRTLVVRPISP 321
           W WSW +  +    W +  R++  VV+PI P
Sbjct: 199 WGWSWKERWIAARPWEI--RAQCYVVKPIKP 227


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 726 IPL*NHVSWYCELCDVHITSKSHADSH 806
           + L N   W+C LCD++ TS+    +H
Sbjct: 146 VGLSNDYPWFCSLCDINATSEQTLLAH 172


>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
           profile PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger C2H2 type
          Length = 977

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 647 LSKNHGEESEKMGCRNRMMVD-LIQKRDSTLKSRELV 754
           LSK++GE+++K+ C+N+   D  ++ ++    ++ELV
Sbjct: 727 LSKDYGEKTKKVSCKNQTTFDSQLKSQNHYTMAKELV 763



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +2

Query: 533 TKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHGEESEKMGCRNRMM 703
           ++ S+   P +    ++P +C VC +  +S      H   K H +  E    +N  M
Sbjct: 664 SQSSVSTNPLKEPEGLQPVWCQVCQISCNSKVAFASHTYGKKHRQNLESQSAKNETM 720


>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1183

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 247 TEDHLDFREER*GITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSCLDQDQDQCL 420
           T DHL F   +     +  HL +  G  GL +  + R     DP+  SCL      CL
Sbjct: 740 TGDHLSFSSVQKTAHQSVTHL-LNSGFFGLKSLDIKRFSYRLDPVNFSCLSFADFPCL 796


>At1g28590.1 68414.m03521 lipase, putative similar to lipase
           [Arabidopsis thaliana] GI:1145627; contains InterPro
           Entry IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 403

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = +1

Query: 169 GFSIMSIPFYKMNSREEYEMNEDC-GWTEDHLDF-----REER*GITNTAMHLEITMGDI 330
           G+S   +  YK +++EEY+    C  W  D  ++     +EE  G+     H+ I   D 
Sbjct: 230 GYSASYLTLYKTSNKEEYDPLTGCLKWLNDFSEYYNKQLQEELNGLRKLYPHVNIIYADY 289

Query: 331 GLTTKVLDRLIIHQDPLRTSCLDQDQDQCLGL 426
                 L RL   Q+P +   +++    C G+
Sbjct: 290 ---YNALLRLF--QEPAKFGFMNRPLPACCGV 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,866
Number of Sequences: 28952
Number of extensions: 380640
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)