Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40183
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    28   1.9  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.9  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   5.7  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.7  

>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 729 FQLSWAFKSALSPYL*SPRLYIMGTLIVLSLLT*KSRSLVSRSS 598
           +Q+ +     L   L SP LY+   ++   L T  SRSLV+RS+
Sbjct: 63  YQIFYVTLDPLDGLLYSPVLYLFSYILPSKLFTIFSRSLVNRSA 106


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 383
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 144 FHYFGKHSGCEVIVS---IFEYIREICDGCHCRDGDSKQTNDCLH 19
           F  FG+H  CEV+++   +  +  EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 557 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 652
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,772
Number of Sequences: 5004
Number of extensions: 64884
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)