Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40182
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    28   0.071
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    28   0.071
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    25   0.50 
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    24   1.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.2  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.2  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 144 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWK 254
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWK 43


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 144 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWK 254
           N+ +  ++ +SF  K CN+     P+ F  P   K LWK
Sbjct: 5   NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWK 43


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 580 MVLSPSTPSHQHPW*SS*VSFHRQSL-NSLALPLVFKLTNNITVFPSNF 437
           M + P +PS    W    VSFH+  L N+++    F + N++  +   F
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRF 102


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 580 MVLSPSTPSHQHPW*SS*VSFHRQSLNS 497
           M + P +PS    W    VSFH+  L +
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKLTN 81


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 702 SSLERRVPVVFFSFFLGNQKVYFCYNFLVLIV 607
           S +E  +P VFF   LG+  ++F +   +LI+
Sbjct: 227 SLVEDTLPCVFF---LGSILIFFIFPLAILII 255


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 637 INLLVAQKKREKNYRDSTL 693
           +N++   +KR  NY+DS +
Sbjct: 90  VNIVHVFRKRRVNYKDSNI 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,738
Number of Sequences: 336
Number of extensions: 4136
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)