Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40182
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 122 7e-29
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 122 7e-29
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 119 5e-28
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.96
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 5.1
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 26 5.1
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 26 5.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 6.8
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 25 9.0
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 9.0
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 9.0
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 122 bits (293), Expect = 7e-29
Identities = 54/78 (69%), Positives = 66/78 (84%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 201 NPARGPFHFRAPSKILWK 254
NP+RG FHFRAPS+I K
Sbjct: 66 NPSRGAFHFRAPSRIFQK 83
Score = 100 bits (240), Expect = 2e-22
Identities = 45/83 (54%), Positives = 55/83 (66%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+AVRGM+PHKT RG+ AL L+ +G PPPFD LKPGR YC VGRL
Sbjct: 83 KAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRL 142
Query: 431 SHEIGWKYRDVVRKLEDKRKGKA 499
S E+GWKY D+V KLE++RK K+
Sbjct: 143 SSEVGWKYSDIVSKLEERRKVKS 165
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 122 bits (293), Expect = 7e-29
Identities = 54/78 (69%), Positives = 66/78 (84%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 201 NPARGPFHFRAPSKILWK 254
NP+RG FHFRAPS+I K
Sbjct: 66 NPSRGAFHFRAPSRIFQK 83
Score = 101 bits (241), Expect = 1e-22
Identities = 45/83 (54%), Positives = 55/83 (66%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+AVRGM+PHKT RG+ AL L+ +G PPPFD LKPGR YC VGRL
Sbjct: 83 KAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRL 142
Query: 431 SHEIGWKYRDVVRKLEDKRKGKA 499
S E+GWKY D+V KLE++RK K+
Sbjct: 143 SSEVGWKYNDIVAKLEERRKVKS 165
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 119 bits (286), Expect = 5e-28
Identities = 51/78 (65%), Positives = 65/78 (83%)
Frame = +3
Query: 21 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 200
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 201 NPARGPFHFRAPSKILWK 254
NP+RG FHFRAPS+I K
Sbjct: 66 NPSRGAFHFRAPSRIFTK 83
Score = 96.7 bits (230), Expect = 3e-21
Identities = 42/83 (50%), Positives = 55/83 (66%)
Frame = +2
Query: 251 EAVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 430
+AVRGM+PHKT RG AL+ L+ +G PPPFD LKP R YC +GRL
Sbjct: 83 KAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRL 142
Query: 431 SHEIGWKYRDVVRKLEDKRKGKA 499
S E+GWKY+++V KLE++RK K+
Sbjct: 143 SSEVGWKYKNIVSKLEERRKIKS 165
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 48 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 152
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 597 LDDGSEWCCRLRHLLTSILGDPLKFLFIGNLLTAL 493
L D E R+RH S++G+P+ + +I ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 232 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFPSRRTLAMTA 68
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 687 DAPKMKPAIVIPRPFPWASSVLLQI 761
D P KP + P +PW+S +L I
Sbjct: 5 DIPLSKPCLNNPPTYPWSSPILSSI 29
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 333 GHPSYVRSLLRAFLPRSVLCGIIP 262
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 131 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKAR 6
D+ A N + L RQ QQM T +YGL+ KAR
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KAR 166
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 733 GKGLGITIAGFIFGASSPCSFFLFFFGQ 650
G G ++ GFI A P F FFFG+
Sbjct: 538 GVGWAGSLLGFIATALIPMPFVFFFFGR 565
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 425 RLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
R SHE +K++D ++K+ D + R +++NL
Sbjct: 27 RRSHEQTYKHQDAIKKVMDDIHRSNLLRQELEKNL 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,575
Number of Sequences: 5004
Number of extensions: 66305
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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