Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40182
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             31   1.0  
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)                 30   1.8  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 29   4.1  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    29   4.1  
SB_54570| Best HMM Match : DAD (HMM E-Value=7)                         29   5.4  
SB_37068| Best HMM Match : DAD (HMM E-Value=7)                         29   5.4  
SB_33168| Best HMM Match : DAD (HMM E-Value=7)                         29   5.4  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   7.2  
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)            28   7.2  
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   9.5  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            28   9.5  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              28   9.5  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 266 MIPHKTERGKNALRRLRTYDGCPPPFD 346
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 34  SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 156
           SM+V +C ++W  + P  F    +L+W+  N   S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303


>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
          Length = 624

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 398 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSP 541
           PG+  C VG+L +   W +  + R L  +    A  R P  +    +P
Sbjct: 535 PGKQLCLVGQLGYRGRWSFSVIDRPLHTRELAAAFTRTPAAKQRANNP 582


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 398  PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLP 514
            PG   C VG+L H   W    + R L  +    A  R P
Sbjct: 1403 PGEQLCLVGQLGHRARWSSSVIDRPLHTRELAAAFTRTP 1441


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 398  PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLP 514
            PG   C VG+L H   W    + R L  +    A  R P
Sbjct: 1234 PGEQLCLVGQLDHRARWSSSVIDRPLHTRELAAAFTRTP 1272


>SB_54570| Best HMM Match : DAD (HMM E-Value=7)
          Length = 134

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 491 GKAVKRLP-MKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 616
           GK+ +RL  ++R +RG   +L+R   R + H+ P+S   + I+
Sbjct: 67  GKSTERLTALERTVRGLRELLLRTKERTKAHNKPTSRSQNLIK 109


>SB_37068| Best HMM Match : DAD (HMM E-Value=7)
          Length = 134

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 491 GKAVKRLP-MKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 616
           GK+ +RL  ++R +RG   +L+R   R + H+ P+S   + I+
Sbjct: 67  GKSTERLTALERTVRGLRELLLRTKERTKAHNKPTSRSQNLIK 109


>SB_33168| Best HMM Match : DAD (HMM E-Value=7)
          Length = 134

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 491 GKAVKRLP-MKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 616
           GK+ +RL  ++R +RG   +L+R   R + H+ P+S   + I+
Sbjct: 67  GKSTERLTALERTVRGLRELLLRTKERTKAHNKPTSRSQNLIK 109


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 250 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 107
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
          Length = 1037

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 398 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLP 514
           PG   C VG+L H   W    + R L  +    A  R P
Sbjct: 848 PGEQLCLVGQLDHRARWSSSVIDRPLHTRELAAAFIRTP 886


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
 Frame = +3

Query: 30  VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 164
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 422 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 315
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +2

Query: 413 CHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPMKRNLRGSPRML 550
           CH+ +L  E   + R+  RK E+KR+  A KR   +RNL+   R+L
Sbjct: 397 CHMQKLETEE--ENRE--RKREEKRRRGAEKRAKRRRNLQTGSRIL 438


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 211 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 101
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,742,672
Number of Sequences: 59808
Number of extensions: 529366
Number of successful extensions: 2073
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)