Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40182
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 133 1e-31
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 133 1e-31
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.7
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 3.6
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 3.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.4
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 133 bits (322), Expect = 1e-31
Identities = 58/82 (70%), Positives = 72/82 (87%)
Frame = +3
Query: 9 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 188
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 189 RCNVNPARGPFHFRAPSKILWK 254
RCN+NPARG FH+RAP KI W+
Sbjct: 62 RCNINPARGAFHYRAPGKIFWR 83
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGM+PHKT RG AL+ LR Y+G P + F L+P R +C VGRLSH
Sbjct: 85 VRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSH 143
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW+++DVV KLE KRK K K+ +
Sbjct: 144 EVGWQFQDVVAKLEAKRKVKGAAYFEQKKKM 174
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 133 bits (322), Expect = 1e-31
Identities = 58/82 (70%), Positives = 72/82 (87%)
Frame = +3
Query: 9 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 188
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 189 RCNVNPARGPFHFRAPSKILWK 254
RCN+NPARG FH+RAP KI W+
Sbjct: 62 RCNINPARGAFHYRAPGKIFWR 83
Score = 89.4 bits (212), Expect = 2e-18
Identities = 42/91 (46%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGM+PHKT RG AL+ LR Y+G P + F L+P R +C VGRLSH
Sbjct: 85 VRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSH 143
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW+++DVV KLE KRK K K+ +
Sbjct: 144 EVGWQFQDVVAKLEAKRKVKGAAYFEQKKKM 174
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 497 PCPSSCLQAYEQHHGISIQFHGTVCLHD 414
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 494 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 405
C S L +E HHGI + G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 761 NLQQYRGCPRKRPWNNYSGLHLWSVE 684
N +QY G P NY+ LH W +E
Sbjct: 45 NFKQYAGYLNSDPNKNYNNLHYWLIE 70
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 761 NLQQYRGCPRKRPWNNYSGLHLWSVE 684
N +QY G P NY+ LH W +E
Sbjct: 45 NFKQYAGYLNSDPNKNYNNLHYWLIE 70
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -1
Query: 461 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 294
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -1
Query: 473 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 300
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 299 HSCHA 285
H HA
Sbjct: 595 HGHHA 599
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 761 NLQQYRGCPRKRPWNNYSGLHLWSVE 684
N +QY G P NY+ LH W +E
Sbjct: 45 NFKQYAGYLNSDPNKNYNNLHYWLIE 70
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EDKRKGKAVKRLPMKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 616
+DKRK +KR+P + R +P R R Q H L S +++
Sbjct: 2160 KDKRKATRIKRVPSAHSARITPITSNLRDRLNQLHQLTVSEDSGSLK 2206
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EDKRKGKAVKRLPMKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 616
+DKRK +KR+P + R +P R R Q H L S +++
Sbjct: 2160 KDKRKATRIKRVPSAHSARITPITSNLRDRLNQLHQLTVSEDSGSLK 2206
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EDKRKGKAVKRLPMKRNLRGSPRMLVRRCRRRQHHSLPSSNPMDTIR 616
+DKRK +KR+P + R +P R R Q H L S +++
Sbjct: 2160 KDKRKATRIKRVPSAHSARITPITSNLRDRLNQLHQLTVSEDSGSLK 2206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,045,029
Number of Sequences: 27780
Number of extensions: 385146
Number of successful extensions: 984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -