Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40182
(764 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 111 5e-25
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 109 1e-24
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 109 1e-24
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 109 3e-24
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 30 1.9
At5g65687.1 68418.m08267 transporter-related low similarity to s... 28 7.8
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 7.8
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 7.8
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 111 bits (267), Expect = 5e-25
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M FLR
Sbjct: 5 SGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 85.8 bits (203), Expect = 3e-17
Identities = 38/81 (46%), Positives = 50/81 (61%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG AL RL+ Y+G P P+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
E+GW + D +++LE KRK +A
Sbjct: 149 EVGWNHYDTIKELETKRKERA 169
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M FLR
Sbjct: 5 SGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 86.6 bits (205), Expect = 2e-17
Identities = 39/91 (42%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW + D +++LE KRK ++ K+ L
Sbjct: 149 EVGWNHYDTIKELEVKRKERSQALYERKKQL 179
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M FLR
Sbjct: 5 SGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/91 (43%), Positives = 55/91 (60%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG NAL RL+ ++G P P+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW + D +++LE+KRK +A K+ L
Sbjct: 149 EVGWNHYDTIKELENKRKERAQAVYERKKQL 179
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 109 bits (261), Expect = 3e-24
Identities = 49/83 (59%), Positives = 60/83 (72%)
Frame = +3
Query: 6 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
+G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M FLR
Sbjct: 5 SGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLR 64
Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
KR N P+ GP HFRAPSKI W+
Sbjct: 65 KRMNTKPSHGPIHFRAPSKIFWR 87
Score = 87.4 bits (207), Expect = 9e-18
Identities = 39/91 (42%), Positives = 54/91 (59%)
Frame = +2
Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
VRGMIPHKT+RG AL RL+ ++G PPP+D L+ G YC +GRLS
Sbjct: 89 VRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSS 148
Query: 437 EIGWKYRDVVRKLEDKRKGKAVKRLPMKRNL 529
E+GW + D +++LE KRK ++ K+ L
Sbjct: 149 EVGWNHYDTIKELETKRKERSQVMYERKKQL 179
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 164
M G++N IDG H+ G A++ + K+ V++ + I++SG R L
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At5g65687.1 68418.m08267 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003976, GI:12003972, GI:12003974,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 492
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -2
Query: 304 KSILATLCFVWDHTSYSFHRILDGALKWKGPRAGFTLHLLRRNDI 170
K++ + F+ + Y + + GA + GP+AGF ++ ++ D+
Sbjct: 272 KALFSEKVFIVNVLGYITYNFVIGAYSYWGPKAGFGIYKMKNADM 316
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 164
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 3 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 164
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,357
Number of Sequences: 28952
Number of extensions: 366006
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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